openvax / mhctools

Related projects: ⓘ

• openvax / mhcflurry
  Peptide-MHC I binding affinity prediction
  ☆191Updated this week
• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆27Updated 2 years ago
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆113Updated last year
• immunoengineer / gliph
  Grouping of Lymphocyte Interactions by Paratope Hotspots
  ☆90Updated 3 years ago
• antigenomics / vdjdb-db
  🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!
  ☆131Updated this week
• mikessh / vdjtools
  Post-analysis of immune repertoire sequencing data
  ☆129Updated 3 months ago
• phbradley / tcr-dist
  Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)
  ☆79Updated 2 years ago
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆45Updated 9 months ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆34Updated last year
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆60Updated this week
• svalkiers / clusTCR
  CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…
  ☆48Updated 5 months ago
• kmayerb / tcrdist3
  flexible CDR based distance metrics
  ☆53Updated last month
• gpp-rnd / rs3
  Package to Score Sequences using Rule Set 3
  ☆11Updated 6 months ago
• theislab / tcellmatch
  ☆37Updated 4 years ago
• statbiophys / OLGA
  Compute generation probabilities of CDR3 amino acid and nucleotide sequences
  ☆45Updated 3 years ago
• FunctionLab / ExPecto
  predicting expression effects of human genome variants ab initio from sequence
  ☆117Updated 3 years ago
• hbc / NGS_Data_Analysis_Course
  ☆22Updated 8 years ago
• Lattice-Automation / seqfold
  nucleic acid folding
  ☆82Updated last month
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆32Updated 2 years ago
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆52Updated 3 months ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆32Updated this week
• jrderuiter / pybiomart
  A simple pythonic interface to biomart.
  ☆54Updated 4 years ago
• IdoSpringer / ERGO-II
  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
  ☆29Updated 2 years ago
• sebriois / biomart
  Python biomart API
  ☆61Updated last year
• qmarcou / IGoR
  IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:
  ☆48Updated 2 years ago
• boscoh / uniprot
  retrieve protein sequence identifiers and metadata from http://uniprot.org
  ☆67Updated 2 years ago
• saezlab / dorothea
  R package to access DoRothEA's regulons
  ☆132Updated 6 months ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆76Updated 2 years ago
• MathOnco / NeoPredPipe
  Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.
  ☆104Updated 2 weeks ago
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆109Updated this week