Python interface to running command-line and web-based MHC binding predictors
☆102May 13, 2026Updated last week
Alternatives and similar repositories for mhctools
Users that are interested in mhctools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Peptide-MHC I binding affinity prediction☆251Updated this week
- HLA-II ligand predictor.☆45Apr 6, 2023Updated 3 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 7 years ago
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- All the fun and adventure of MHC naming, now in Python☆10Apr 5, 2026Updated last month
- Ranked vaccine peptides for personalized cancer immunotherapy☆63May 16, 2026Updated last week
- HLA-I ligand predictor☆45Mar 19, 2026Updated 2 months ago
- A Python tool for prediction MHC ligand☆35Feb 10, 2019Updated 7 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Aug 3, 2017Updated 8 years ago
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Nov 14, 2017Updated 8 years ago
- Python interface to amino acid properties and IEDB☆57Apr 8, 2026Updated last month
- MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline☆30Feb 16, 2026Updated 3 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- MHC Class I and Class II neoantigen binding prediction☆37Jul 23, 2025Updated 10 months ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17May 22, 2023Updated 3 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Updated this week
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- A sequence-based pan model for peptide-MHC I binding affinity prediction.☆26Apr 25, 2019Updated 7 years ago
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 5 years ago
- Precision HLA typing from next-generation sequencing data☆217Mar 3, 2026Updated 2 months ago
- ☆14Mar 2, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python package and command line tool for epitope prediction☆53Aug 2, 2024Updated last year
- ☆30Oct 6, 2021Updated 4 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Nov 17, 2023Updated 2 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆60Apr 16, 2019Updated 7 years ago
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆257Apr 17, 2026Updated last month
- Python-based framework for computational immunomics☆40Jul 7, 2021Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆400May 13, 2026Updated last week
- A webtool for the clinical interpretation of CNVs in rare disease patients☆13Jun 10, 2022Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆91Jun 14, 2022Updated 3 years ago
- ☆14Nov 3, 2021Updated 4 years ago
- Load biophysicochemical properties of amino acids, Kidera factors and Atchley factors into R and Python in only a single line.☆16Nov 3, 2019Updated 6 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 3 years ago
- flexible CDR based distance metrics☆72Dec 16, 2025Updated 5 months ago
- Trans-association between HLA and TCR-CDR3☆19Mar 29, 2023Updated 3 years ago
- ☆19Feb 20, 2018Updated 8 years ago