Python interface to running command-line and web-based MHC binding predictors
☆99Oct 4, 2024Updated last year
Alternatives and similar repositories for mhctools
Users that are interested in mhctools are comparing it to the libraries listed below
Sorting:
- Peptide-MHC I binding affinity prediction☆232Feb 17, 2026Updated 2 weeks ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 7 years ago
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- Python interface to amino acid properties and IEDB☆57Oct 7, 2024Updated last year
- HLA-II ligand predictor.☆46Apr 6, 2023Updated 2 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆61Feb 10, 2026Updated 2 weeks ago
- A Python tool for prediction MHC ligand☆34Feb 10, 2019Updated 7 years ago
- MHCAttnNet: Allele-Peptide predictions for class I & class II MHC alleles☆30Feb 14, 2021Updated 5 years ago
- MHC Class I and Class II neoantigen binding prediction☆35Jul 23, 2025Updated 7 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- A sequence-based pan model for peptide-MHC I binding affinity prediction.☆26Apr 25, 2019Updated 6 years ago
- ☆30Oct 6, 2021Updated 4 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Aug 3, 2017Updated 8 years ago
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Nov 14, 2017Updated 8 years ago
- Precision HLA typing from next-generation sequencing data☆210Mar 5, 2024Updated last year
- Python-based framework for computational immunomics☆40Jul 7, 2021Updated 4 years ago
- HLA-I ligand predictor☆43Sep 24, 2025Updated 5 months ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- Simple matching of HTS samples based on HLA typing☆14Jan 4, 2017Updated 9 years ago
- MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline☆27Feb 16, 2026Updated 2 weeks ago
- Python package to annotate and visualize gene fusions.☆65Sep 30, 2024Updated last year
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆251Feb 11, 2026Updated 2 weeks ago
- MHC class II binding prediction☆14Dec 27, 2022Updated 3 years ago
- 🏺 Exploring novel tumor epitope identification☆38Oct 7, 2020Updated 5 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Nov 17, 2023Updated 2 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Apr 16, 2019Updated 6 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Feb 18, 2025Updated last year
- All the fun and adventure of MHC naming, now in Python☆10Dec 2, 2022Updated 3 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 8 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 2 years ago
- Copy number estimation of highly duplicated sequences☆10Aug 15, 2017Updated 8 years ago
- Assemble the Genome in a Bottle sequencing data☆10Aug 4, 2017Updated 8 years ago
- Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl☆400Aug 13, 2025Updated 6 months ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Apr 9, 2019Updated 6 years ago
- commandline manipulation of genomic variants and NGS reads☆19Sep 6, 2024Updated last year
- A webtool for the clinical interpretation of CNVs in rare disease patients☆13Jun 10, 2022Updated 3 years ago
- ☆14Nov 3, 2021Updated 4 years ago
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago