openvax / mhctools
Python interface to running command-line and web-based MHC binding predictors
☆96Updated 7 months ago
Alternatives and similar repositories for mhctools:
Users that are interested in mhctools are comparing it to the libraries listed below
- Peptide-MHC I binding affinity prediction☆203Updated last month
- 🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!☆137Updated this week
- [REPLACED by https://github.com/antigenomics/mirpy] Post-analysis of immune repertoire sequencing data☆135Updated 11 months ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 2 years ago
- HLA-II ligand predictor.☆43Updated 2 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆93Updated 4 years ago
- Package to Score Sequences using Rule Set 3☆11Updated last year
- ☆73Updated last year
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆83Updated 3 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆118Updated 2 years ago
- flexible CDR based distance metrics☆60Updated 8 months ago
- Immunoglobulin and T-Cell receptor rearrangement software☆48Updated last year
- HLA-I ligand predictor☆38Updated 4 months ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆110Updated 8 months ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆52Updated 3 years ago
- MHC Class I and Class II neoantigen binding prediction☆29Updated 2 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆45Updated 5 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆38Updated last month
- Tool for deep mutational scanning experiments.☆49Updated last month
- ☆39Updated 4 years ago
- ☆38Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆67Updated this week
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆75Updated 9 months ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆82Updated 3 years ago
- Python biomart API☆65Updated last year
- Core code for the DeepHF prediction tool☆36Updated 5 years ago
- Public repository for ShapeMapper 2 releases☆34Updated 5 months ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆58Updated last week
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆32Updated 3 years ago
- code to run sei and obtain sei and sequence class predictions☆102Updated 2 years ago