openvax / mhctoolsLinks
Python interface to running command-line and web-based MHC binding predictors
☆98Updated last year
Alternatives and similar repositories for mhctools
Users that are interested in mhctools are comparing it to the libraries listed below
Sorting:
- HLA-II ligand predictor.☆45Updated 2 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆69Updated this week
- MHC Class I and Class II neoantigen binding prediction☆32Updated 3 months ago
- Immunoglobulin and T-Cell receptor rearrangement software☆50Updated last year
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆42Updated 2 weeks ago
- Tool for deep mutational scanning experiments.☆54Updated 7 months ago
- Peptide-MHC I binding affinity prediction☆217Updated 5 months ago
- 🗂️ [vdjdb.cdr3.net is up and running] Git-based TCR database storage & management. Submissions welcome!☆145Updated 2 weeks ago
- ☆38Updated last year
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆82Updated last year
- predicting peptide and TCR interaction☆20Updated 4 years ago
- ☆68Updated 2 years ago
- Absolute quantification package based on quantms.io☆16Updated last month
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆29Updated 3 years ago
- Code and data used in The Great Repertoire Project☆29Updated 4 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆59Updated 2 months ago
- predicting expression effects of human genome variants ab initio from sequence☆132Updated 8 months ago
- DRUGZ software☆24Updated 4 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆97Updated 4 years ago
- HLA-I ligand predictor☆43Updated last month
- Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id☆47Updated 2 years ago
- [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data☆140Updated last year
- ☆40Updated 5 years ago
- Python biomart API☆69Updated 2 years ago
- deep residual neural network for classifying the pathogenicity of missense mutations.☆115Updated 4 years ago
- Package to Score Sequences using Rule Set 3☆12Updated last month
- ☆70Updated 8 months ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆53Updated 6 years ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago