GfellerLab / MixMHC2predLinks
HLA-II ligand predictor.
☆43Updated 2 years ago
Alternatives and similar repositories for MixMHC2pred
Users that are interested in MixMHC2pred are comparing it to the libraries listed below
Sorting:
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆32Updated 3 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆34Updated 3 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆80Updated 3 years ago
- HLA-I ligand predictor☆40Updated 6 months ago
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆16Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆53Updated last year
- flexible CDR based distance metrics☆63Updated 10 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 2 years ago
- ☆74Updated last year
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆18Updated 2 months ago
- MHC Class I and Class II neoantigen binding prediction☆29Updated 2 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 2 years ago
- ☆38Updated last year
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆21Updated 11 months ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆53Updated 3 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆68Updated this week
- predicting peptide and TCR interaction☆20Updated 4 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆47Updated 2 years ago
- ☆40Updated 4 years ago
- an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression☆10Updated last year
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 3 years ago
- ☆29Updated 4 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆39Updated this week
- PRedictor of IMmunogenic Epitopes☆22Updated last month
- Functional Embedding of Gene Signatures☆45Updated last year
- Code and data used in The Great Repertoire Project☆30Updated 4 years ago
- Predictor of TCR-epitope interactions☆26Updated 5 months ago
- Code for 5UTR project☆24Updated 2 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Updated 4 years ago
- Computational Optimization of DNA Activity (CODA)☆60Updated 2 months ago