☆49Jul 7, 2022Updated 4 years ago
Alternatives and similar repositories for antigen.garnish
Users that are interested in antigen.garnish are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- Snakemake-based computational workflow for neoantigen prediction from diverse sources☆19Jul 6, 2026Updated 2 months ago
- 🏺 Exploring novel tumor epitope identification☆39Oct 7, 2020Updated 5 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆15Jan 15, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 4 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆22Jun 22, 2026Updated 2 months ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆64Updated this week
- Peptide-MHC I binding affinity prediction☆274Updated this week
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Sep 13, 2023Updated 2 years ago
- PRedictor of IMmunogenic Epitopes☆35Sep 24, 2025Updated 11 months ago
- Pipeline to detect HLA disruption from WES and RNAseq data☆23Feb 17, 2025Updated last year
- predicting peptide and TCR interaction☆19Jan 27, 2021Updated 5 years ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- HLA-II ligand predictor.☆51Aug 25, 2026Updated last week
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆98Sep 15, 2025Updated 11 months ago
- ☆30Oct 6, 2021Updated 4 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆60Apr 16, 2019Updated 7 years ago
- ☆18Jan 30, 2023Updated 3 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆96Dec 4, 2020Updated 5 years ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆118Sep 2, 2024Updated 2 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆95Jun 6, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Precision HLA typing from next-generation sequencing data☆223May 20, 2026Updated 3 months ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆45Mar 25, 2023Updated 3 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Feb 19, 2020Updated 6 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆23Feb 17, 2023Updated 3 years ago
- ☆19Apr 20, 2025Updated last year
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆162Aug 20, 2024Updated 2 years ago
- ☆14Nov 3, 2021Updated 4 years ago
- ☆13Aug 14, 2020Updated 6 years ago
- HLA-I ligand predictor☆48Mar 19, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 5 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆24Apr 10, 2025Updated last year
- ☆15Jul 16, 2026Updated last month
- 🐶 hlabud: HLA genotype analysis in R☆19Apr 11, 2025Updated last year
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Feb 8, 2022Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆69Aug 19, 2026Updated 2 weeks ago
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆25Jul 8, 2026Updated last month