☆49Jul 7, 2022Updated 4 years ago
Alternatives and similar repositories for antigen.garnish
Users that are interested in antigen.garnish are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆52Sep 12, 2019Updated 6 years ago
- Snakemake-based computational workflow for neoantigen prediction from diverse sources☆19Jul 6, 2026Updated last month
- 🏺 Exploring novel tumor epitope identification☆39Oct 7, 2020Updated 5 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆15Jan 15, 2017Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 4 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.☆22Jun 22, 2026Updated last month
- Ranked vaccine peptides for personalized cancer immunotherapy☆63Jun 20, 2026Updated last month
- Peptide-MHC I binding affinity prediction☆271Jul 24, 2026Updated 3 weeks ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Sep 13, 2023Updated 2 years ago
- PRedictor of IMmunogenic Epitopes☆34Sep 24, 2025Updated 10 months ago
- Pipeline to detect HLA disruption from WES and RNAseq data☆23Feb 17, 2025Updated last year
- predicting peptide and TCR interaction☆19Jan 27, 2021Updated 5 years ago
- Snakemake workflow for neoantigen prediction☆15Sep 7, 2023Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- HLA-II ligand predictor.☆51Jul 17, 2026Updated last month
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆96Sep 15, 2025Updated 11 months ago
- ☆30Oct 6, 2021Updated 4 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆60Apr 16, 2019Updated 7 years ago
- ☆18Jan 30, 2023Updated 3 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆96Dec 4, 2020Updated 5 years ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆118Sep 2, 2024Updated last year
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆94Jun 6, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Precision HLA typing from next-generation sequencing data☆223May 20, 2026Updated 2 months ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 3 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Feb 19, 2020Updated 6 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆23Feb 17, 2023Updated 3 years ago
- ☆19Apr 20, 2025Updated last year
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆161Aug 20, 2024Updated last year
- ☆14Nov 3, 2021Updated 4 years ago
- ☆13Aug 14, 2020Updated 6 years ago
- HLA-I ligand predictor☆47Mar 19, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 5 years ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆24Apr 10, 2025Updated last year
- ☆15Jul 16, 2026Updated last month
- 🐶 hlabud: HLA genotype analysis in R☆19Apr 11, 2025Updated last year
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆26Feb 8, 2022Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆69Updated this week
- SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA re…☆24Jul 8, 2026Updated last month