andrewrech / antigen.garnish
☆47Updated 2 years ago
Alternatives and similar repositories for antigen.garnish:
Users that are interested in antigen.garnish are comparing it to the libraries listed below
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- Epimap processing and analysis code repository☆33Updated 2 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- ☆47Updated 2 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆49Updated 5 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 8 years ago
- ☆38Updated 5 years ago
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆28Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆49Updated 5 years ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆21Updated last year
- Explore the cancer relevance of your gene list☆50Updated 2 weeks ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated 2 weeks ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆48Updated last year
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 6 months ago
- Genome-wide assessment of differential translations with ribosome profiling data☆19Updated 2 years ago
- BAGEL software☆27Updated last year
- A computational workflow for exitron splicing identification☆12Updated 6 months ago
- ☆11Updated 5 years ago
- Junction centric alternative splicing translator☆19Updated 2 years ago
- A continually expanding collection of RNA-seq tools☆48Updated 5 months ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 6 months ago
- ☆34Updated 6 months ago
- ☆13Updated 4 years ago
- 3D hotspot mutation proximity analysis tool☆46Updated last year
- Data of genome annotation from full-stack ChromHMM model trained with 1032 datasets from 127 reference epigenomes☆32Updated 8 months ago