andrewrech / antigen.garnishLinks
☆49Updated 3 years ago
Alternatives and similar repositories for antigen.garnish
Users that are interested in antigen.garnish are comparing it to the libraries listed below
Sorting:
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 6 years ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆78Updated this week
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆111Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆61Updated 9 months ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆97Updated 4 years ago
- ☆62Updated 5 years ago
- A computational workflow for exitron splicing identification☆12Updated last year
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆77Updated 3 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆140Updated last year
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆49Updated last month
- 2017_2018 single cell RNA sequencing Workshop UCD_UCB_UCSF☆36Updated 7 years ago
- CLIP-seq Analysis of Multi-mapped reads☆31Updated 4 years ago
- Integrative analysis pipeline for pooled CRISPR functional genetic screens☆30Updated last year
- ☆65Updated 2 years ago
- A list of alternative splicing analysis resources☆46Updated 5 months ago
- Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)☆74Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆36Updated 4 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆85Updated 3 months ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆95Updated last year
- This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge☆20Updated 5 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆58Updated 4 years ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆80Updated 4 years ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated last month
- DaPars(Dynamic analysis of Alternative PolyAdenylation from RNA-seq)☆51Updated 2 years ago
- Epimap processing and analysis code repository☆33Updated 3 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 7 months ago