pirl-unc / mhcgnomesView external linksLinks
Parsing MHC nomenclature in the wild
☆18Feb 5, 2026Updated last week
Alternatives and similar repositories for mhcgnomes
Users that are interested in mhcgnomes are comparing it to the libraries listed below
Sorting:
- ☆14Nov 3, 2021Updated 4 years ago
- De novo tandem repeat calling from PacBio HiFi data☆19Dec 5, 2025Updated 2 months ago
- Genome-wide TR catalog and variation clusters described in [Weisburd, Dolzhenko, et al. 2024]☆17Jan 30, 2026Updated 2 weeks ago
- A CNN model to identify MEIs in WGS☆12Mar 4, 2025Updated 11 months ago
- HAT is a set of tools for calling de novo variants from whole-genome sequencing data.☆24Nov 18, 2025Updated 2 months ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated 9 months ago
- A pipeline creation tool using Snakemake☆12Updated this week
- Prediction of glycopeptide fragment mass spectra by deep learning☆10Feb 20, 2024Updated last year
- ☆13Apr 18, 2022Updated 3 years ago
- JTK -- a regional diploid genome assembler☆25Oct 20, 2024Updated last year
- Run multiple programs to check if a VCF is usable☆11May 15, 2020Updated 5 years ago
- ☆12Dec 6, 2023Updated 2 years ago
- De novo chromosome-level scaffolding and phasing tool using Hi-C☆29Nov 23, 2025Updated 2 months ago
- These scripts reformat a VCF into a SQLite database, with R☆15Jul 15, 2021Updated 4 years ago
- Mark duplicate reads from PacBio sequencing of an amplified library☆12Feb 26, 2025Updated 11 months ago
- convert reads from repeated measures of same piece of DNA into spaced matricies for deep learners.☆14Apr 21, 2023Updated 2 years ago
- ☆13May 30, 2023Updated 2 years ago
- ☆14Oct 17, 2024Updated last year
- ☆12May 6, 2022Updated 3 years ago
- Python library for analyzing mass spectrometry proteomics data.☆14Mar 20, 2024Updated last year
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Oct 5, 2021Updated 4 years ago
- R package and wrapper functions for identifying serial structural variations from genome assemblies☆29Sep 21, 2024Updated last year
- Quality of life improvements for Bioinformatics in Python.☆31Feb 3, 2026Updated last week
- A tool set to assess the quality of the per read phasing and reduce the errors.☆13Jun 25, 2020Updated 5 years ago
- Hierarchical binned indexed data store for on-disk genomic data.☆13Jan 18, 2025Updated last year
- Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs…☆13Nov 9, 2024Updated last year
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆54Mar 7, 2025Updated 11 months ago
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 3 years ago
- ☆12Oct 13, 2021Updated 4 years ago
- GenNotes – public consensus annotation of genetic variants☆11Mar 27, 2016Updated 9 years ago
- Transfer HiFi read mappings from their own assembly contigs to a standard reference☆29Dec 30, 2025Updated last month
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 2 years ago
- Scripts and utilities for analyzing tandem repeats (TRs).☆42Updated this week
- ☆15Apr 10, 2024Updated last year
- DNN-based small variant caller☆12May 2, 2022Updated 3 years ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18Aug 17, 2025Updated 5 months ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated last year