PRedictor of IMmunogenic Epitopes
☆29Sep 24, 2025Updated 5 months ago
Alternatives and similar repositories for PRIME
Users that are interested in PRIME are comparing it to the libraries listed below
Sorting:
- HLA-I ligand predictor☆44Sep 24, 2025Updated 5 months ago
- ☆14Nov 3, 2021Updated 4 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning☆12Jun 19, 2023Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆77Apr 1, 2023Updated 2 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Nov 17, 2023Updated 2 years ago
- ☆11Sep 7, 2023Updated 2 years ago
- ☆48Jul 7, 2022Updated 3 years ago
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- HLA-II ligand predictor.☆46Apr 6, 2023Updated 2 years ago
- ☆168Mar 12, 2026Updated last week
- Protein design and variant prediction using autoregressive generative models☆24Feb 27, 2023Updated 3 years ago
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆16Sep 27, 2022Updated 3 years ago
- R/Package Version Check☆22Oct 22, 2021Updated 4 years ago
- ☆19Oct 26, 2021Updated 4 years ago
- 🐶 hlabud: HLA genotype analysis in R☆17Apr 11, 2025Updated 11 months ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- ☆20Sep 22, 2015Updated 10 years ago
- Assessing the impact of mutations on antibody-antigen binding affinity☆18Dec 7, 2020Updated 5 years ago
- ☆23May 31, 2022Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Sep 13, 2023Updated 2 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆38Nov 14, 2021Updated 4 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Apr 16, 2019Updated 6 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆122Sep 16, 2025Updated 6 months ago
- My first ever repository, some notebooks useful, others sucks. Topics include file format conversion with obabel, docking with Auto Dock,…☆26Oct 22, 2025Updated 4 months ago
- HGVS variant description extractor☆11Sep 14, 2020Updated 5 years ago
- Run multiple Pipeline5 instances at once☆11Jun 6, 2025Updated 9 months ago
- 🛜 An interactive browser for the VDJdb database☆15Updated this week
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 2 years ago
- Paired Replicate Analysis of Allelic Differential Splicing Events☆12Feb 21, 2023Updated 3 years ago
- ImmuneApp for HLA-I epitope prediction and immunopeptidome analysis☆14Sep 21, 2024Updated last year
- Supplementary data for the ACME algorithm☆23Oct 2, 2022Updated 3 years ago
- ☆10Jan 21, 2023Updated 3 years ago
- TRUST4 manuscript evaluation☆17Jul 8, 2022Updated 3 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆64Mar 12, 2026Updated last week
- MODELLER-based, anchor restrained, Peptide-MHC Modelling pipeline☆27Feb 16, 2026Updated last month
- Repo for advertising and organizing CIViC unconference/meeting activities☆10Jul 24, 2025Updated 7 months ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- MHC-peptide class II interaction prediction, binding, presentation☆22Mar 16, 2022Updated 4 years ago