GfellerLab / PRIMELinks
PRedictor of IMmunogenic Epitopes
☆25Updated 4 months ago
Alternatives and similar repositories for PRIME
Users that are interested in PRIME are comparing it to the libraries listed below
Sorting:
- HLA-II ligand predictor.☆46Updated 2 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆22Updated 2 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 11 months ago
- HLA-I ligand predictor☆43Updated 4 months ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago
- flexible CDR based distance metrics☆69Updated last month
- ☆38Updated 2 years ago
- ☆48Updated 3 years ago
- 🏺 Exploring novel tumor epitope identification☆38Updated 5 years ago
- MHC Class I and Class II neoantigen binding prediction☆34Updated 6 months ago
- Absolve antibody variable domain sequence analysis☆18Updated 7 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆63Updated 2 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆26Updated 3 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Updated 2 years ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆73Updated this week
- ☆31Updated 7 months ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆64Updated 5 months ago
- A toolkit for optimal workflow recommendation for proteomics data differential expression analysis☆19Updated last year
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Updated 2 years ago
- ☆11Updated 6 years ago
- ☆23Updated 3 years ago
- DRUGZ software☆25Updated 4 years ago
- A shiny-based web tool for interactive analysis of DepMap data☆24Updated 4 years ago
- A collection of useful functions for bioinformatics data analysis☆24Updated last month
- Collection of tools to retrieve siRNA (small interfering RNA) candidate sequences targeting your gene of interest from popular siRNA desi…☆16Updated 3 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 8 years ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Updated 11 months ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- predicting peptide and TCR interaction☆20Updated 5 years ago
- A database of T-cell receptor sequences☆11Updated 5 months ago