hammerlab / epidiscoLinks
Personalized cancer epitope discovery and peptide vaccine prediction pipeline
☆30Updated 7 years ago
Alternatives and similar repositories for epidisco
Users that are interested in epidisco are comparing it to the libraries listed below
Sorting:
- Probabilistic HLA typing☆35Updated 5 years ago
- Ontology for Immune Epitopes☆13Updated 5 months ago
- Seqnature: incorporate SNPs and Indels into a reference genome☆16Updated 8 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Updated 5 months ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 4 years ago
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- This BLENDER has been sunsetted☆16Updated 9 months ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆58Updated 9 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- Python-based framework for computational immunomics☆40Updated 4 years ago
- ☆10Updated 4 years ago
- A specification and Python implementation for representing variants from Multiplexed Assays of Variant Effect.☆10Updated 2 months ago
- Prediction of the 3D structure of the genome through statistically significant Hi-C contacts.☆21Updated 6 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Updated 7 years ago
- I have put my modified version of the deepbind code here.☆8Updated 9 years ago
- Scripts supporting identification of genomic features affecting survival time in cancer☆12Updated 6 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- Population Reference Graphs for the HLA and MHC.☆35Updated 6 years ago
- A Python wrapper around Clustal Omega (http://www.clustal.org/omega/)☆25Updated 3 years ago
- Table of Multiplexed Assay of Variant Effect (MAVE) studies☆11Updated 2 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Updated 2 years ago
- Bioinformatics Ketrew Pipelines☆28Updated 3 years ago
- Vidjil -- High-throughput Analysis of V(D)J Immune Repertoire (mirror, please go to http://gitlab.vidjil.org)☆29Updated last month
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆42Updated 3 weeks ago
- Yet Another Motif Discovery Algorithm☆53Updated 6 years ago
- ☆28Updated 6 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Updated 7 years ago
- Deconvolution of seed effects from gene effects in large scale RNAi screens☆11Updated 7 years ago
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆44Updated 7 years ago