openvax / neoantigen-vaccine-pipelineLinks
Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
☆83Updated 6 months ago
Alternatives and similar repositories for neoantigen-vaccine-pipeline
Users that are interested in neoantigen-vaccine-pipeline are comparing it to the libraries listed below
Sorting:
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- ☆48Updated 3 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 5 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆84Updated 2 months ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Updated 5 months ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆58Updated 10 months ago
- Downloader for ENCODE☆32Updated 4 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Clinical interpretation of somatic mutations in cancer☆47Updated 5 months ago
- ☆41Updated 7 years ago
- Predicting gene expression levels from genomic sequences☆53Updated 5 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 6 years ago
- ChIP-Atlas: Browse and analyze all public ChIP/DNase-seq data on your browser☆76Updated 3 weeks ago
- ☆36Updated 6 years ago
- Tissue-specific variant effect predictions on splicing☆42Updated 2 years ago
- ☆50Updated 6 years ago
- ChIP-seq DC and QC Pipeline☆35Updated 4 years ago
- Deep-learning Augmented RNA-seq analysis of Transcript Splicing☆114Updated last year
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- Processing of single cell RNAseq data for the recovery of TCRs in python☆29Updated 4 years ago
- REVOLVER - Repeated Evolution in Cancer☆65Updated 2 years ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆76Updated 2 months ago
- Python package to annotate and visualize gene fusions.☆64Updated 10 months ago
- ☆44Updated 6 years ago
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- Deep neural networks for predicting CpG methylation☆37Updated 8 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- phenotype-based prioritization of candidate genes for human diseases☆65Updated 2 years ago
- A quick and flexible single-cell RNA-seq processing framework on the cloud☆39Updated 5 years ago