openvax / neoantigen-vaccine-pipeline
Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
☆75Updated last month
Related projects: ⓘ
- 3D hotspot mutation proximity analysis tool☆45Updated last year
- ☆46Updated 2 years ago
- DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools☆61Updated 5 years ago
- ☆23Updated 6 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆65Updated 3 weeks ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆44Updated 5 years ago
- IPAW: a Nextflow workflow for proteogenomics☆24Updated last month
- Ranked vaccine peptides for personalized cancer immunotherapy☆53Updated last month
- Tissue-specific variant effect predictions on splicing☆40Updated last year
- ☆67Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 3 years ago
- Processing of single cell RNAseq data for the recovery of TCRs in python☆26Updated 3 years ago
- Python for HLA analysis: summary, association analysis, zygosity test and interaction test☆31Updated last month
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆40Updated 2 weeks ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆46Updated last year
- Clinical interpretation of somatic mutations in cancer☆42Updated 2 years ago
- Framework for Metastatic And Clonal History INtegrative Analysis☆34Updated 3 years ago
- viGEN - A bioinformatics pipeline for the exploration of viral RNA in human NGS data☆26Updated 6 months ago
- Regression-based annotation of protein-coding sequences from ribosome profiling data☆29Updated 4 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆50Updated 6 years ago
- Coda: a convolutional denoising algorithm for genome-wide ChIP-seq data☆33Updated 7 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆20Updated 3 years ago
- Code for the CRISPOR article, all data and code to create figures and analysis☆41Updated 8 years ago
- Identifying recurrent mutations in cancer☆37Updated 3 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated last year
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆39Updated 2 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆74Updated 7 months ago
- Downloader for ENCODE☆31Updated 3 years ago
- Galaxy RNA workbench☆38Updated 3 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆43Updated 2 years ago