Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
β93Sep 15, 2025Updated 7 months ago
Alternatives and similar repositories for neoantigen-vaccine-pipeline
Users that are interested in neoantigen-vaccine-pipeline are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Ranked vaccine peptides for personalized cancer immunotherapyβ63Updated this week
- πΊ Exploring novel tumor epitope identificationβ38Oct 7, 2020Updated 5 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)β30Aug 30, 2019Updated 6 years ago
- β23Apr 27, 2026Updated last week
- Peptide-MHC I binding affinity predictionβ248Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI β’ AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Personalized cancer epitope discovery and peptide vaccine prediction pipelineβ30Nov 14, 2017Updated 8 years ago
- β14Nov 3, 2021Updated 4 years ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.β117Sep 2, 2024Updated last year
- β174Apr 30, 2026Updated last week
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.β52Sep 12, 2019Updated 6 years ago
- β48Jul 7, 2022Updated 3 years ago
- NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.β21Aug 9, 2022Updated 3 years ago
- Pipeline to detect HLA disruption from WES and RNAseq dataβ22Feb 17, 2025Updated last year
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing dataβ38Nov 14, 2021Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean β’ AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- MicrOSAtellite Instability Classifierβ15Apr 27, 2026Updated last week
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.β29Feb 12, 2021Updated 5 years ago
- xHLA: Fast and accurate HLA typing from short read sequence dataβ115Oct 13, 2023Updated 2 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohortsβ20Jun 7, 2018Updated 7 years ago
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNAβ14Feb 16, 2023Updated 3 years ago
- R package to do enrichment analysis for neoantigensβ13Feb 21, 2022Updated 4 years ago
- Snakemake workflow for neoantigen predictionβ15Sep 7, 2023Updated 2 years ago
- QBRC Neoantigen calling pipeline with CSiN calculation embeddedβ26Feb 8, 2022Updated 4 years ago
- Predict mutated T-cell epitopes from sequencing dataβ30May 3, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- β19Feb 20, 2018Updated 8 years ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seqβ158Aug 20, 2024Updated last year
- Nextflow pipeline for Mutect2 somatic variant calling best practicesβ23Jun 14, 2024Updated last year
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptidesβ¦β44Mar 25, 2023Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq dataβ28Sep 13, 2023Updated 2 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictionsβ11Jul 8, 2021Updated 4 years ago
- Non-parametric structural variant genotyperβ15Nov 18, 2021Updated 4 years ago
- β123Sep 5, 2023Updated 2 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflowβ13Oct 22, 2018Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways β’ AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Detecting cancer subtypes with machine learning.β10Feb 5, 2020Updated 6 years ago
- Python package to annotate and visualize gene fusions.β67Apr 14, 2026Updated 3 weeks ago
- HLA-I ligand predictorβ45Mar 19, 2026Updated last month
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alleβ¦β44Aug 24, 2022Updated 3 years ago
- HLA-II ligand predictor.β45Apr 6, 2023Updated 3 years ago
- Β a Customized Proteogenomic Workflow for Neoantigen Prediction and Selectionβ24Apr 6, 2022Updated 4 years ago
- Microsatellite instability (MSI) detection for tumor only data.β114Apr 23, 2024Updated 2 years ago