uci-cbcl / HLA-bindLinks
Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction
☆26Updated 8 years ago
Alternatives and similar repositories for HLA-bind
Users that are interested in HLA-bind are comparing it to the libraries listed below
Sorting:
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Updated 2 years ago
- Python package and command line tool for epitope prediction☆51Updated last year
- ☆17Updated 3 years ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 8 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- Python interface to running command-line and web-based MHC binding predictors☆98Updated 10 months ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated this week
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- HLA-I ligand predictor☆42Updated 7 months ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆50Updated 6 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆72Updated 2 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 8 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Updated 2 years ago
- Function prediction using a deep ontology-aware classifier☆84Updated 2 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆67Updated 2 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- A collection of available Python tools for Proteomics analysis☆58Updated 6 years ago
- Immunoglobulin and T-Cell receptor rearrangement software☆49Updated last year
- software for the analysis and visualization of deep mutational scanning data☆35Updated 2 years ago
- ☆38Updated last year
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆67Updated 3 years ago
- Protein Identification with Deep Learning☆98Updated 4 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Updated 3 months ago
- Detects hotspot regions for somatic mutations in 3D protein structures☆3Updated last year
- Code for 5UTR project☆25Updated 2 years ago
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆41Updated last year
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆49Updated 11 months ago