uci-cbcl / HLA-bind
Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction
☆25Updated 7 years ago
Alternatives and similar repositories for HLA-bind:
Users that are interested in HLA-bind are comparing it to the libraries listed below
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆41Updated last year
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 7 years ago
- HLA-I ligand predictor☆31Updated last month
- MHC Class I and Class II neoantigen binding prediction☆26Updated last year
- predicting peptide and TCR interaction☆20Updated 4 years ago
- ☆17Updated 2 years ago
- Python interface to running command-line and web-based MHC binding predictors☆94Updated 3 months ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 2 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆78Updated this week
- 3D hotspot mutation proximity analysis tool☆46Updated last year
- A Python tool for prediction MHC ligand☆33Updated 5 years ago
- Python package and command line tool for epitope prediction☆51Updated 5 months ago
- "Representation Learning of Genomic Sequence Motifs with Convolutional Neural Networks" by Peter K. Koo and Sean R. Eddy☆31Updated 5 years ago
- An algorithm for error-correction of immunosequencing Illumina MiSeq reads and immunoproteogenomic analysis☆17Updated 6 years ago
- HLA-II ligand predictor.☆38Updated last year
- iDeep: integrated prediction of RNA-protein binding sites using deep learning☆39Updated 4 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆28Updated 9 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆49Updated 5 years ago
- HTS-compatible wrapper for IgBlast V-(D)-J mapping tool☆52Updated 3 months ago
- Detects hotspot regions for somatic mutations in 3D protein structures☆2Updated 10 months ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated this week
- ☆37Updated last year
- Package to Score Sequences using Rule Set 3☆11Updated 11 months ago
- Python module for the easy handling and analysis of DNase-seq data☆37Updated 5 years ago
- ☆47Updated 2 years ago
- ☆23Updated 6 years ago
- CRISPR Cas9 ontarget prediction software☆26Updated last year
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆43Updated 5 years ago