Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction
☆26Aug 3, 2017Updated 8 years ago
Alternatives and similar repositories for HLA-bind
Users that are interested in HLA-bind are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 3 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- Python for HLA analysis: summary, association analysis, zygosity test and interaction test☆37Apr 8, 2026Updated 2 months ago
- HLA-I ligand predictor☆46Mar 19, 2026Updated 2 months ago
- A sequence-based pan model for peptide-MHC I binding affinity prediction.☆26Apr 25, 2019Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆16Feb 24, 2017Updated 9 years ago
- Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium☆11Jun 14, 2023Updated 2 years ago
- ☆17Mar 22, 2022Updated 4 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Nov 17, 2023Updated 2 years ago
- MHCAttnNet: Allele-Peptide predictions for class I & class II MHC alleles☆30Feb 14, 2021Updated 5 years ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 9 years ago
- Python package and command line tool for epitope prediction☆54Aug 2, 2024Updated last year
- Kourami: Graph-guided assembly for HLA alleles☆40May 21, 2019Updated 7 years ago
- predicting peptide and TCR interaction☆20Jan 27, 2021Updated 5 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Python interface to running command-line and web-based MHC binding predictors☆102May 13, 2026Updated 3 weeks ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Apr 22, 2025Updated last year
- Peptide-MHC I binding affinity prediction☆253Updated this week
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 5 years ago
- A Python tool for prediction MHC ligand☆36Feb 10, 2019Updated 7 years ago
- Upload test☆23Jan 1, 2024Updated 2 years ago
- Predicting T Cell Receptor Specificity with Deep Learning☆10Jul 17, 2019Updated 6 years ago
- Comparative evaluation of different methods for TCR clustering☆12Aug 28, 2018Updated 7 years ago
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆259Apr 17, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Example Cloud Datalab iPython Notebooks for genomics use cases.☆25Sep 5, 2017Updated 8 years ago
- ☆11Aug 5, 2020Updated 5 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆63May 22, 2026Updated 2 weeks ago
- ☆11Jan 2, 2021Updated 5 years ago
- IMGT segment library converted to RepSeq.IO JSON format☆13Mar 21, 2023Updated 3 years ago
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Nov 14, 2017Updated 8 years ago
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆17Sep 27, 2022Updated 3 years ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆115Oct 13, 2023Updated 2 years ago
- ☆20Sep 25, 2020Updated 5 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 6 years ago
- Fast HLA type inference from whole-genome data☆146Apr 3, 2025Updated last year
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Mar 30, 2026Updated 2 months ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Apr 4, 2022Updated 4 years ago
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- Python interface to amino acid properties and IEDB☆57Apr 8, 2026Updated 2 months ago
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 6 years ago