uci-cbcl / HLA-bindLinks
Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction
☆26Updated 8 years ago
Alternatives and similar repositories for HLA-bind
Users that are interested in HLA-bind are comparing it to the libraries listed below
Sorting:
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Updated 3 years ago
- ☆17Updated 3 years ago
- Python package and command line tool for epitope prediction☆52Updated last year
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆29Updated 8 years ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- Python interface to running command-line and web-based MHC binding predictors☆99Updated last year
- HLA-I ligand predictor☆43Updated 3 months ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆55Updated 6 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆74Updated 2 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Updated 2 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆43Updated 2 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 9 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Updated 3 weeks ago
- MHC Class I and Class II neoantigen binding prediction☆33Updated 5 months ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 3 years ago
- Protein Identification with Deep Learning☆101Updated 5 years ago
- A Python tool for prediction MHC ligand☆34Updated 6 years ago
- Function prediction using a deep ontology-aware classifier☆85Updated 3 years ago
- Peptide-MHC I binding affinity prediction☆226Updated 7 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆44Updated last year
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated this week
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆58Updated 3 weeks ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆66Updated 3 years ago
- software for the analysis and visualization of deep mutational scanning data☆34Updated 3 years ago
- ☆38Updated 2 years ago
- ☆59Updated 8 years ago
- ProNA2020: System predicting protein-DNA, protein-RNA and protein-protein binding sites from sequence☆14Updated 5 years ago
- an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression☆12Updated last year