uci-cbcl / HLA-bindLinks
Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction
☆26Updated 8 years ago
Alternatives and similar repositories for HLA-bind
Users that are interested in HLA-bind are comparing it to the libraries listed below
Sorting:
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Updated 3 years ago
- Python package and command line tool for epitope prediction☆52Updated last year
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- HLA-II ligand predictor.☆44Updated 2 years ago
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 8 years ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆53Updated 6 years ago
- Python interface to running command-line and web-based MHC binding predictors☆98Updated last year
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆26Updated 8 years ago
- ☆17Updated 3 years ago
- HLA-I ligand predictor☆43Updated 2 weeks ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆73Updated 2 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Updated 2 years ago
- ☆68Updated 2 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆43Updated 2 months ago
- De novo peptide sequencing for DDA and DIA by deep learning☆36Updated 4 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 2 years ago
- MHC Class I and Class II neoantigen binding prediction☆32Updated 2 months ago
- ☆10Updated 5 years ago
- Function prediction using a deep ontology-aware classifier☆84Updated 2 years ago
- retrieve protein sequence identifiers and metadata from http://uniprot.org☆68Updated 3 years ago
- A hybrid deep convolutional neural network for predicting chromatin accessibility☆25Updated 6 years ago
- Immunoglobulin and T-Cell receptor rearrangement software☆50Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- DeepMass is a suite of tools to enable mass spectrometry data analysis using modern machine learning techniques.☆51Updated 3 years ago
- Code for 5UTR project☆25Updated 2 years ago
- ☆59Updated 8 years ago
- Standard set of data-loaders for training and making predictions for DNA sequence-based models.☆82Updated last year
- Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"☆23Updated last year
- Tool for deep mutational scanning experiments.☆54Updated 7 months ago