Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction
☆26Aug 3, 2017Updated 8 years ago
Alternatives and similar repositories for HLA-bind
Users that are interested in HLA-bind are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 3 years ago
- Probabilistic HLA typing☆35Aug 31, 2019Updated 6 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago
- Python for HLA analysis: summary, association analysis, zygosity test and interaction test☆38Jul 24, 2024Updated last year
- HLA-I ligand predictor☆45Mar 19, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- A sequence-based pan model for peptide-MHC I binding affinity prediction.☆26Apr 25, 2019Updated 6 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆16Feb 24, 2017Updated 9 years ago
- Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium☆11Jun 14, 2023Updated 2 years ago
- ☆17Mar 22, 2022Updated 4 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Nov 17, 2023Updated 2 years ago
- MHCAttnNet: Allele-Peptide predictions for class I & class II MHC alleles☆30Feb 14, 2021Updated 5 years ago
- Python package and command line tool for epitope prediction☆53Aug 2, 2024Updated last year
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 9 years ago
- predicting peptide and TCR interaction☆20Jan 27, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Python interface to running command-line and web-based MHC binding predictors☆101Updated this week
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Apr 22, 2025Updated 11 months ago
- Peptide-MHC I binding affinity prediction☆243Mar 30, 2026Updated last week
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 5 years ago
- A Python tool for prediction MHC ligand☆34Feb 10, 2019Updated 7 years ago
- Upload test☆23Jan 1, 2024Updated 2 years ago
- Predicting T Cell Receptor Specificity with Deep Learning☆10Jul 17, 2019Updated 6 years ago
- Comparative evaluation of different methods for TCR clustering☆12Aug 28, 2018Updated 7 years ago
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆253Mar 25, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Example Cloud Datalab iPython Notebooks for genomics use cases.☆25Sep 5, 2017Updated 8 years ago
- Ranked vaccine peptides for personalized cancer immunotherapy☆62Updated this week
- ☆11Jan 2, 2021Updated 5 years ago
- IMGT segment library converted to RepSeq.IO JSON format☆13Mar 21, 2023Updated 3 years ago
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆16Sep 27, 2022Updated 3 years ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆114Oct 13, 2023Updated 2 years ago
- ☆20Sep 25, 2020Updated 5 years ago
- Fast HLA type inference from whole-genome data☆144Apr 3, 2025Updated last year
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Mar 30, 2026Updated last week
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Apr 4, 2022Updated 4 years ago
- Python interface to amino acid properties and IEDB☆57Updated this week
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 5 years ago
- Cyclic-peptide - protein complexes benchmark and associated scripts and data☆15Aug 31, 2024Updated last year
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- Multi-Omics Peptide Generator☆30Nov 6, 2025Updated 5 months ago