For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow
☆13Oct 22, 2018Updated 7 years ago
Alternatives and similar repositories for Deep-Learning-MHCI
Users that are interested in Deep-Learning-MHCI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 3 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Aug 3, 2017Updated 8 years ago
- ☆17Dec 13, 2020Updated 5 years ago
- A transposition caller.☆12Oct 5, 2023Updated 2 years ago
- ☆25Feb 2, 2021Updated 5 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Deep proteome inference from peptide profiles☆13Jul 16, 2020Updated 5 years ago
- generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.☆16Oct 19, 2019Updated 6 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 4 years ago
- The inverse materials design is a key topic of materials science nowadays. The proposed software solutions are useful tools for decision …☆11Jul 15, 2020Updated 5 years ago
- ATTRACT program suite for macromolecular docking (protein-protein, protein-nucleic acid, protein-peptide)☆20Mar 13, 2026Updated 2 months ago
- A Python tool for prediction MHC ligand☆36Feb 10, 2019Updated 7 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 3 years ago
- Open-source opinionated Galaxy-based framework for microbiota analysis☆13Jan 21, 2021Updated 5 years ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Apr 6, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Nov 14, 2017Updated 8 years ago
- Scripts for bioinformatics data processing and analysis☆12Nov 7, 2023Updated 2 years ago
- ☆11Aug 5, 2020Updated 5 years ago
- A deep learning model to predict anticancer peptides.☆24Jul 10, 2019Updated 6 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- Calibrated clustering with artificial variables to avoid over-clustering in single-cell RNA-sequencing☆21Nov 18, 2025Updated 6 months ago
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA