altayg / Deep-Learning-MHCI
For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow
☆12Updated 6 years ago
Alternatives and similar repositories for Deep-Learning-MHCI:
Users that are interested in Deep-Learning-MHCI are comparing it to the libraries listed below
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- Collection of scripts for pre- and postprocessing neoantigen discovery calls.☆9Updated 5 years ago
- Detects hotspot regions for somatic mutations in 3D protein structures☆2Updated last year
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆29Updated last week
- ☆10Updated 3 years ago
- Deep learning based prediction of IsoForm FUnctions from Sequences and Expression☆15Updated 3 years ago
- mRNN is an implementation of a Gated Recurrent Unit (GRU) network for classification of transcripts as either coding or noncoding.☆19Updated 6 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated last month
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆20Updated last year
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆20Updated last year
- Fast, sensitive and accurate protein remote homology search on GPUs☆15Updated 10 months ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆35Updated 7 years ago
- Data Integration tool utilizing network information for predictive analyses☆16Updated last year
- Examples for gget (https://github.com/pachterlab/gget).☆32Updated 2 months ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- Kdrew's scripts for handling protein complex map data☆14Updated last year
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Updated 2 years ago
- Python, modeling and Flux balance analysis tutorials for the undergraduate Systems Biology course in Amsterdam☆13Updated 5 years ago
- Public repository for building and analyzing protein complex maps☆11Updated 8 years ago
- Summary statistics for repertoires☆16Updated 2 years ago
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 5 years ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 2 years ago
- ☆17Updated 2 months ago
- A collection of useful functions for bioinformatics data analysis☆21Updated 8 months ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆41Updated 2 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆25Updated last year