altayg / Deep-Learning-MHCILinks
For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow
☆13Updated 7 years ago
Alternatives and similar repositories for Deep-Learning-MHCI
Users that are interested in Deep-Learning-MHCI are comparing it to the libraries listed below
Sorting:
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Updated 3 years ago
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Updated 4 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆43Updated 2 years ago
- Deep learning based prediction of IsoForm FUnctions from Sequences and Expression☆15Updated 5 months ago
- Deep proteome inference from peptide profiles☆13Updated 5 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆33Updated 9 months ago
- Fast, sensitive and accurate protein remote homology search on GPUs☆16Updated last year
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆27Updated last year
- A sequence-based pan model for peptide-MHC II binding affinity prediction.☆21Updated 3 years ago
- ☆19Updated last year
- MHC-II presentation predictor☆13Updated 2 years ago
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Updated 5 years ago
- End-to-end deep learning toolkit for predicting protein binding sites and motifs.☆45Updated 6 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 11 months ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Updated 2 years ago
- ☆10Updated 4 years ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆66Updated 3 years ago
- MHC Class I and Class II neoantigen binding prediction☆33Updated 5 months ago
- The Complete Python Antibody Library☆24Updated 2 months ago
- 🧛 Deep generative models for TCR sequences 🧛☆17Updated 3 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Updated 8 years ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- ViennaRNA Package consists of a C code library for the prediction and comparison of RNA secondary structures☆14Updated 3 years ago
- Network annotation visualization☆18Updated 7 months ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆44Updated last year
- Machine learning workflows for analyzing high-throughput protein data☆26Updated 9 years ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Updated 3 years ago
- Code for LazyAF pipeline☆21Updated last year