For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow
☆13Oct 22, 2018Updated 7 years ago
Alternatives and similar repositories for Deep-Learning-MHCI
Users that are interested in Deep-Learning-MHCI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆18Aug 18, 2022Updated 3 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Aug 3, 2017Updated 8 years ago
- ☆17Dec 13, 2020Updated 5 years ago
- ☆25Feb 2, 2021Updated 5 years ago
- A transposition caller.☆12Oct 5, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ConvMHC - a web server for peptide-MHC class I binding predictions using deep convolutional neural networks☆18Sep 10, 2024Updated last year
- Deep proteome inference from peptide profiles☆13Jul 16, 2020Updated 6 years ago
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Apr 6, 2022Updated 4 years ago
- ATTRACT program suite for macromolecular docking (protein-protein, protein-nucleic acid, protein-peptide)☆20Mar 13, 2026Updated 4 months ago
- ☆11Aug 5, 2020Updated 5 years ago
- generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions.☆16Oct 19, 2019Updated 6 years ago
- a flexible tool for microsatellite investigation and visualization☆10Jun 15, 2026Updated last month
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 5 years ago
- The inverse materials design is a key topic of materials science nowadays. The proposed software solutions are useful tools for decision …☆11Jul 15, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Python tool for prediction MHC ligand☆36Feb 10, 2019Updated 7 years ago
- ☆20Nov 4, 2021Updated 4 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆45Mar 25, 2023Updated 3 years ago
- Open-source opinionated Galaxy-based framework for microbiota analysis☆13Jan 21, 2021Updated 5 years ago
- Personalized cancer epitope discovery and peptide vaccine prediction pipeline☆30Nov 14, 2017Updated 8 years ago
- Scripts for bioinformatics data processing and analysis☆12Nov 7, 2023Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆29Feb 12, 2021Updated 5 years ago
- de novo targeted gene assembly☆22Apr 16, 2021Updated 5 years ago
- A deep learning model to predict anticancer peptides.☆25Jul 10, 2019Updated 7 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Phylogenetic Clustering (Phyloclustering)☆10Sep 6, 2023Updated 2 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Nov 17, 2023Updated 2 years ago
- hexo theme☆11Apr 8, 2022Updated 4 years ago
- A sequence-based pan model for peptide-MHC I binding affinity prediction.☆26Apr 25, 2019Updated 7 years ago
- Redis Celery Fabric Gunicorn Personal Blog☆13Aug 8, 2017Updated 8 years ago
- Pipeline to call somatic cancer neoantigens from mutations in patient tumor DNA☆14Feb 16, 2023Updated 3 years ago
- Supporting information of 'Single-cell RNA sequencing of a European and an African lymphoblastoid cell line'☆11Feb 27, 2020Updated 6 years ago
- This repository contains course materials from JAX-BD2K workshop.☆33May 14, 2019Updated 7 years ago
- Analysis and design of protein-protein or protein-peptide interactions based on atlas database.☆15Sep 27, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R codes for generating candidates of novel polymers with high thermal conductivity using iqspr (R package)☆15Jan 22, 2019Updated 7 years ago
- ☆12Dec 1, 2021Updated 4 years ago
- nyhackr website written using RMarkdown☆10Updated this week
- Inorganic Reaction Prediction☆11Jul 25, 2024Updated last year
- Peptide Virtual Screening Pipeline☆14Jul 3, 2019Updated 7 years ago
- Major Histocompatibility Complex (MHC) Binding Affinity Prediction☆10Apr 22, 2021Updated 5 years ago
- a tutorial about gitbook☆11Oct 2, 2018Updated 7 years ago