Alternatives and similar repositories for vaxrank

Users that are interested in vaxrank are comparing it to the libraries listed below

• ding-lab / hotspot3d
  3D hotspot mutation proximity analysis tool
  ☆47Updated 2 years ago
• openvax / neoantigen-vaccine-pipeline
  Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines
  ☆82Updated 4 months ago
• openvax / varcode
  Library for manipulating genomic variants and predicting their effects
  ☆84Updated 11 months ago
• ambj / MuPeXI
  MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.
  ☆50Updated 5 years ago
• morrislab / phylowgs
  Application for inferring subclonal composition and evolution from whole-genome sequencing data.
  ☆109Updated 2 years ago
• jpiper / pyDNase
  Python module for the easy handling and analysis of DNase-seq data
  ☆37Updated 5 years ago
• ueser / FIDDLE
  Flexible Integration of Data with Deep LEarning
  ☆50Updated 2 years ago
• cfce / chilin
  ChIP-seq DC and QC Pipeline
  ☆34Updated 4 years ago
• BGI2016 / PSSMHCpan
  A novel PSSM based software for predicting class I peptide-HLA binding affinity
  ☆17Updated 8 years ago
• murphycj / AGFusion
  Python package to annotate and visualize gene fusions.
  ☆63Updated 8 months ago
• Dongwon-Lee / lsgkm
  ☆51Updated last year
• griffithlab / pVAC-Seq
  DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVACtools
  ☆61Updated 6 years ago
• UMCUGenetics / RNASeq
  RNASeq pipeline
  ☆36Updated 5 years ago
• kundajelab / dfim
  Deep Feature Interaction Maps (DFIM)
  ☆53Updated 6 years ago
• pachterlab / scRNA-Seq-TCC-prep
  Preprocessing of single-cell RNA-Seq (deprecated)
  ☆62Updated 5 years ago
• BD2KGenomics / toil-rnaseq
  UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline
  ☆41Updated 4 years ago
• BradnerLab / pipeline
  bradner lab computation pipeline scripts
  ☆54Updated 3 years ago
• nellore / intropolis
  Exon-exon splice junctions across SRA
  ☆41Updated 3 years ago
• andrewrech / antigen.garnish
  ☆48Updated 2 years ago
• pdxgx / neoepiscope
  predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data
  ☆27Updated last year
• rhondabacher / SCnorm
  Normalization for single cell RNA-seq data
  ☆47Updated 2 weeks ago
• Teichlab / bracer
  BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data
  ☆42Updated 9 months ago
• macarthur-lab / igv_utils
  utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.
  ☆49Updated 6 years ago
• ElementoLab / scTCRseq
  Processing of single cell RNAseq data for the recovery of TCRs in python
  ☆28Updated 4 years ago
• getzlab / deTiN
  DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…
  ☆50Updated 3 years ago
• TRON-Bioinformatics / seq2HLA
  In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…
  ☆49Updated last year
• broadinstitute / oncotator
  ☆68Updated 3 years ago
• hart-lab / bagel
  BAGEL software
  ☆27Updated last year
• sanjanalab / GUIDES
  A new workflow for the custom design of CRISPR libraries.
  ☆21Updated 2 years ago
• aboyle / F-seq
  A Feature Density Estimator for High-Throughput Sequence Tags
  ☆23Updated 4 years ago