Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
☆266Aug 26, 2026Updated last week
Alternatives and similar repositories for IMGTHLA
Users that are interested in IMGTHLA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Precision HLA typing from next-generation sequencing data☆223May 20, 2026Updated 3 months ago
- HLA typing for Sanger Based Test☆20Apr 7, 2023Updated 3 years ago
- Python for HLA analysis: summary, association analysis, zygosity test and interaction test☆37Apr 8, 2026Updated 5 months ago
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆162Aug 20, 2024Updated 2 years ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆117Oct 13, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Fast HLA type inference from whole-genome data☆147Apr 3, 2025Updated last year
- A thorough tutorial on HLA imputation and association, accompanying our manuscript "Tutorial: A statistical genetics guide to identifying…☆74Oct 10, 2024Updated last year
- Probabilistic HLA typing☆35Aug 31, 2019Updated 7 years ago
- Population Reference Graphs for the HLA and MHC.☆35Dec 18, 2018Updated 7 years ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Precision HLA typing from next-generation sequencing data☆81Updated this week
- SOAP-HLA is a flow of sequencing data analysis pipeline to type all of the HLA genes in IMGT/HLA database using capture sequenced data or…☆10Jun 3, 2020Updated 6 years ago
- HLA ARD Reduction in Python☆19Aug 20, 2026Updated 2 weeks ago
- Peptide-MHC I binding affinity prediction☆274Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, …☆62Jul 27, 2026Updated last month
- Microsatellite Instability (MSI) detection using high-throughput sequencing data.☆117Apr 2, 2025Updated last year
- A software for haplotype inference☆13May 13, 2025Updated last year
- Fork of the Polysolver project☆33Nov 21, 2019Updated 6 years ago
- In-silico method written in Python and R to determine HLA genotypes of a sample. seq2HLA takes standard RNA-Seq sequence reads in fastq f…☆52Aug 9, 2025Updated last year
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 5 years ago
- Kourami: Graph-guided assembly for HLA alleles☆42May 21, 2019Updated 7 years ago
- ⛏ HLA predictions from NGS shotgun data☆57Updated this week
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Aug 3, 2017Updated 9 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆187Updated this week
- 🐶 hlabud: HLA genotype analysis in R☆19Apr 11, 2025Updated last year
- The Ensembl Variant Effect Predictor predicts the functional effects of genomic variants☆570Updated this week
- Immunogenetic Data Tools related to HLA, GLStrings, Linkage Disequilibrium☆12Aug 30, 2026Updated last week
- ☆14May 30, 2023Updated 3 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆97Jun 26, 2026Updated 2 months ago
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆400Updated this week
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆118Sep 2, 2024Updated 2 years ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆243Feb 12, 2026Updated 6 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆26Dec 4, 2019Updated 6 years ago
- ☆33Aug 9, 2021Updated 5 years ago
- A sequence-based pan model for peptide-MHC I binding affinity prediction.☆26Apr 25, 2019Updated 7 years ago
- HLA-I ligand predictor☆48Mar 19, 2026Updated 5 months ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 8 years ago
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 8 years ago
- STAR-Fusion codebase☆254Apr 18, 2026Updated 4 months ago