ANHIG / IMGTHLALinks
Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute
☆245Updated 2 months ago
Alternatives and similar repositories for IMGTHLA
Users that are interested in IMGTHLA are comparing it to the libraries listed below
Sorting:
- A python extension for quick access to bigWig and bigBed files☆238Updated 11 months ago
- Precision HLA typing from next-generation sequencing data☆205Updated last year
- ☆166Updated 2 weeks ago
- [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing data☆142Updated last year
- A deep learning-based tool to identify splice variants☆475Updated 5 months ago
- Neoantigens prediction pipeline for multi- or single-region vcf files using ANNOVAR and netMHCpan.☆112Updated last year
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆379Updated last week
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆261Updated 5 months ago
- Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments☆328Updated 2 weeks ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆184Updated 2 weeks ago
- TCR and BCR assembly from RNA-seq data☆337Updated this week
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆201Updated 4 months ago
- Documentation for the ANNOVAR software☆245Updated 5 months ago
- 🗂️ [vdjdb.cdr3.net server will undergo maintenance this December, web site may be unreachable!] Git-based TCR database storage & managem…☆149Updated this week
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.☆201Updated last week
- ☆284Updated 2 months ago
- A structural variation pipeline for short-read sequencing☆200Updated last week
- parallel fastq-dump wrapper☆301Updated 2 years ago
- Peptide-MHC I binding affinity prediction☆224Updated 7 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆158Updated 3 weeks ago
- Fast and accurate gene fusion detection from RNA-Seq data☆257Updated 3 months ago
- Tool for plotting sequencing data along genomic coordinates.☆335Updated 3 weeks ago
- Customizable workflows based on snakemake and python for the analysis of NGS data☆395Updated 2 weeks ago
- Application for making ENCODE Blacklists☆333Updated 4 years ago
- Simple oligo analysis and primer design☆186Updated last week
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆198Updated last week
- Fast and accurate in silico inference of HLA genotypes from RNA-seq☆150Updated last year
- A short tutorial on how to use RSEM☆139Updated 5 years ago
- Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.☆229Updated last month
- SUPPA: Fast quantification of splicing and differential splicing☆290Updated last month