A sequence-based pan model for peptide-MHC I binding affinity prediction.
☆26Apr 25, 2019Updated 7 years ago
Alternatives and similar repositories for DeepSeqPan
Users that are interested in DeepSeqPan are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Mar 2, 2021Updated 5 years ago
- Supplementary data for the ACME algorithm☆23Oct 2, 2022Updated 3 years ago
- ConvMHC - a web server for peptide-MHC class I binding predictions using deep convolutional neural networks☆18Sep 10, 2024Updated last year
- MHCAttnNet: Allele-Peptide predictions for class I & class II MHC alleles☆30Feb 14, 2021Updated 5 years ago
- ☆21Mar 20, 2022Updated 4 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆14Nov 3, 2021Updated 4 years ago
- MHC Class I and Class II neoantigen binding prediction☆37Jul 23, 2025Updated last year
- MHC-peptide class II interaction prediction, binding, presentation☆22Mar 16, 2022Updated 4 years ago
- A sequence-based pan model for peptide-MHC II binding affinity prediction.☆21May 16, 2022Updated 4 years ago
- Peptide-MHC I binding affinity prediction☆270Jul 24, 2026Updated 2 weeks ago
- A simple BLOSUM module for python3☆18Nov 21, 2025Updated 8 months ago
- A Python tool for prediction MHC ligand☆35Feb 10, 2019Updated 7 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆30Aug 20, 2024Updated last year
- ☆11Aug 5, 2020Updated 6 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆50Nov 19, 2021Updated 4 years ago
- For MHC-I protein-peptide binding predictions: Deep Learning model with CNN and Snakemake workflow☆13Oct 22, 2018Updated 7 years ago
- ☆11Mar 11, 2018Updated 8 years ago
- MHC class II binding prediction☆15Dec 27, 2022Updated 3 years ago
- ☆17Dec 13, 2020Updated 5 years ago
- HLA-I ligand predictor☆47Mar 19, 2026Updated 4 months ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆29Apr 22, 2025Updated last year
- Python interface to running command-line and web-based MHC binding predictors☆103Jul 11, 2026Updated last month
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆265Jul 14, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆10Aug 5, 2022Updated 4 years ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 3 years ago
- Python package and command line tool for epitope prediction☆54Aug 2, 2024Updated 2 years ago
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution☆14May 4, 2022Updated 4 years ago
- Internal to Koho, there is a technical reading group; this is a list of the readings we went through.☆11Jul 4, 2017Updated 9 years ago
- Cyclic-peptide - protein complexes benchmark and associated scripts and data☆16Aug 31, 2024Updated last year
- A unified and modular interface to homology modelling software☆12Sep 27, 2023Updated 2 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆12Jul 8, 2021Updated 5 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Code for "A Deep Learning Framework for Flexible Docking and Design"☆17Sep 29, 2022Updated 3 years ago
- ☆12Mar 16, 2024Updated 2 years ago
- A Generative Model for Molecules in 3D Space☆12Nov 10, 2021Updated 4 years ago
- Mutation rate analysis of autosomal loci☆15Jun 25, 2020Updated 6 years ago
- ☆15Nov 13, 2023Updated 2 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆34Jan 27, 2026Updated 6 months ago
- Phylogenetic Clustering (Phyloclustering)☆10Sep 6, 2023Updated 2 years ago