Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
☆77Apr 1, 2023Updated 3 years ago
Alternatives and similar repositories for DeepImmuno
Users that are interested in DeepImmuno are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- PRedictor of IMmunogenic Epitopes☆29Sep 24, 2025Updated 6 months ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 3 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Apr 1, 2022Updated 4 years ago
- TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning☆12Jun 19, 2023Updated 2 years ago
- Parsing MHC nomenclature in the wild☆19Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Peptide-MHC I binding affinity prediction☆243Mar 30, 2026Updated 2 weeks ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆64Dec 17, 2025Updated 3 months ago
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆17Apr 22, 2024Updated last year
- ☆13Aug 14, 2020Updated 5 years ago
- HLA-I ligand predictor☆45Mar 19, 2026Updated 3 weeks ago
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆53Feb 18, 2026Updated last month
- [Deprectated, use vdjmatch2 instead] ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Feb 23, 2026Updated last month
- [Nature Machine Intelligence] ImmunoStruct enables multimodal deep learning for immunogenicity prediction☆44Mar 5, 2026Updated last month
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆90Jun 14, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A computational workflow for exitron splicing identification☆15Aug 30, 2024Updated last year
- ☆14Nov 3, 2021Updated 4 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆59May 4, 2022Updated 3 years ago
- ☆15Jun 24, 2024Updated last year
- ☆16Updated this week
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Nov 26, 2020Updated 5 years ago
- ☆31Jun 24, 2025Updated 9 months ago
- An improved method for predicting toxicity of the peptides and designing of non-toxic peptides☆29May 29, 2025Updated 10 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆61Oct 25, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆23Feb 17, 2023Updated 3 years ago
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆16Sep 27, 2022Updated 3 years ago
- TEIM: TCR-Epitope Interaction Modeling☆56Jul 26, 2023Updated 2 years ago
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆234May 13, 2025Updated 11 months ago
- HLA-II ligand predictor.☆45Apr 6, 2023Updated 3 years ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆30Oct 6, 2022Updated 3 years ago
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆21Apr 8, 2026Updated last week
- DeepSP is an antibody-specific surrogate CNN model that can generate 30 spatial properties of an antibody solely based on their sequences…☆19Feb 23, 2026Updated last month
- MHCAttnNet: Allele-Peptide predictions for class I & class II MHC alleles☆30Feb 14, 2021Updated 5 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆75Sep 2, 2020Updated 5 years ago
- ☆48Mar 30, 2026Updated 2 weeks ago
- ☆11Sep 7, 2023Updated 2 years ago
- Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"☆15Oct 17, 2024Updated last year
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- ☆48Jan 10, 2025Updated last year
- EvolveX, a de novo antibody computational design pipeline.☆23Sep 18, 2025Updated 6 months ago