frankligy / DeepImmunoView external linksLinks
Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
☆76Apr 1, 2023Updated 2 years ago
Alternatives and similar repositories for DeepImmuno
Users that are interested in DeepImmuno are comparing it to the libraries listed below
Sorting:
- PRedictor of IMmunogenic Epitopes☆25Sep 24, 2025Updated 4 months ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Apr 1, 2022Updated 3 years ago
- TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning☆12Jun 19, 2023Updated 2 years ago
- Peptide-MHC I binding affinity prediction☆230Jan 22, 2026Updated 3 weeks ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆60Dec 17, 2025Updated last month
- HLA-I ligand predictor☆43Sep 24, 2025Updated 4 months ago
- Parsing MHC nomenclature in the wild☆18Feb 5, 2026Updated last week
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Nov 12, 2018Updated 7 years ago
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆52Feb 12, 2025Updated last year
- Predicting immunogenic peptide recognized by TCR through ensemble deep learning☆17Apr 22, 2024Updated last year
- [Nature Machine Intelligence] ImmunoStruct enables multimodal deep learning for immunogenicity prediction☆34Updated this week
- ☆15Dec 19, 2025Updated last month
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆61Oct 25, 2023Updated 2 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆89Jun 14, 2022Updated 3 years ago
- ☆14Nov 3, 2021Updated 4 years ago
- ☆11Sep 7, 2023Updated 2 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆22Feb 17, 2023Updated 2 years ago
- HLA-II ligand predictor.☆46Apr 6, 2023Updated 2 years ago
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Nov 26, 2020Updated 5 years ago
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆20Updated this week
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆15Sep 27, 2022Updated 3 years ago
- ☆13Aug 14, 2020Updated 5 years ago
- DeepSP is an antibody-specific surrogate CNN model that can generate 30 spatial properties of an antibody solely based on their sequences…☆19Aug 6, 2025Updated 6 months ago
- A convolutional neural network model to predict spatial charge map (SCM) score, a molecular dynamics simulation-based model to predict an…☆29Oct 6, 2022Updated 3 years ago
- ☆15Jun 24, 2024Updated last year
- EvolveX, a de novo antibody computational design pipeline.☆22Sep 18, 2025Updated 4 months ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆59May 4, 2022Updated 3 years ago
- ☆46Mar 26, 2025Updated 10 months ago
- Code for NeurIPS 2024 paper "A SARS-CoV-2 Interaction Dataset and VHH Sequence Corpus for Antibody Language Models"☆14Oct 17, 2024Updated last year
- Convert TCR gene names☆14Dec 26, 2025Updated last month
- A computational workflow for exitron splicing identification☆14Aug 30, 2024Updated last year
- Predictor of TCR-epitope interactions☆34Sep 9, 2025Updated 5 months ago
- flexible CDR based distance metrics☆69Dec 16, 2025Updated last month
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆225May 13, 2025Updated 9 months ago
- An improved method for predicting toxicity of the peptides and designing of non-toxic peptides☆26May 29, 2025Updated 8 months ago
- ☆23Jan 16, 2026Updated 3 weeks ago
- ☆31Jun 24, 2025Updated 7 months ago
- TEIM: TCR-Epitope Interaction Modeling☆56Jul 26, 2023Updated 2 years ago