Alternatives and similar repositories for DeepImmuno

Users that are interested in DeepImmuno are comparing it to the libraries listed below

• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆45Updated 2 years ago
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆40Updated last year
• schumacherlab / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆28Updated 6 months ago
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆82Updated last year
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated last month
• ntranoslab / esm-variants
  ☆82Updated 2 years ago
• TencentAILabHealthcare / DeepAIR
  ☆38Updated 2 years ago
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆42Updated last year
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆57Updated 3 years ago
• Abalign / Abalign
  A visualization software for antibody multi sequence alignment
  ☆21Updated last year
• viragbioinfo / IMMREP_2022_TCRSpecificity
  ☆21Updated 3 years ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆44Updated 3 months ago
• MIDIfactory / AlphaFastPPi
  Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening
  ☆39Updated last year
• Devil625 / Codon_Optimization
  https://www.nature.com/articles/s41598-020-74091-z#Tab1
  ☆40Updated last year
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆34Updated last year
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated 2 years ago
• pgmikhael / protgps
  ☆96Updated 4 months ago
• Genentech / Absolve
  Absolve antibody variable domain sequence analysis
  ☆18Updated 7 years ago
• IdoSpringer / ERGO-II
  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
  ☆34Updated 3 years ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆59Updated 4 years ago
• a96123155 / TransPHLA-AOMP
  ☆48Updated 3 years ago
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆52Updated last month
• normandavey / AlphaFold2-IDR-complex-prediction
  ☆39Updated 4 years ago
• walterlab-HMS / SPOC
  Code repository for the SPOC tool for scoring binary AF-M predicitons.
  ☆14Updated 6 months ago
• patrickbryant1 / SpeedPPI
  Rapid protein-protein interaction network creation from multiple sequence alignments with Deep Learning
  ☆90Updated last year
• ShenLab / gMVP
  ☆21Updated 3 years ago
• bm2-lab / PanPep
  ☆51Updated last year
• Rostlab / ConSurf
  Evolutionary conservation estimation of residues or nucleotides
  ☆52Updated 3 years ago