openvax / topiaryLinks
Predict mutated T-cell epitopes from sequencing data
☆30Updated 6 months ago
Alternatives and similar repositories for topiary
Users that are interested in topiary are comparing it to the libraries listed below
Sorting:
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 6 years ago
- 3D hotspot mutation proximity analysis tool☆48Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆36Updated 4 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Bioinformatics pipeline for selecting patient-specific cancer neoantigen vaccines☆84Updated this week
- ☆20Updated 3 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 4 years ago
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆32Updated 8 months ago
- Explore the cancer relevance of your gene list☆52Updated 6 months ago
- IPAW: a Nextflow workflow for proteogenomics☆28Updated last year
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆58Updated 4 years ago
- ☆20Updated 8 years ago
- Computational correction of copy-number effect in CRISPR-Cas9 essentiality screens☆30Updated 6 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated 11 months ago
- Core functionality of the CGAT code☆33Updated 3 weeks ago
- Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.☆34Updated this week
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Proteome-Wide Association Study☆47Updated 4 years ago
- The Read Origin Protocol (ROP) is a computational protocol that aims to discover the source of all reads, including those originating fro…☆36Updated last year
- Identifying recurrent mutations in cancer☆38Updated 4 years ago
- Detect somatic variants from tumor and normal WGS/WXS data☆19Updated 4 months ago
- MetaSRA: normalized sample-specific metadata for the Sequence Read Archive☆45Updated last week
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Updated 4 years ago
- xOmicsShiny: an R Shiny application for cross-omics data analysis and pathway mapping, Bioinformatics Advances, Volume 5, Issue 1, 2025, …☆32Updated last month
- A tool for fast and accurate summarizing of variant calling format (VCF) files☆61Updated 2 years ago
- ☆49Updated 3 years ago
- CADD scripts release for offline scoring. For more information about CADD, please visit our website☆85Updated 3 months ago