openvax / topiary
Predict mutated T-cell epitopes from sequencing data
☆30Updated 2 months ago
Alternatives and similar repositories for topiary:
Users that are interested in topiary are comparing it to the libraries listed below
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- 3D hotspot mutation proximity analysis tool☆47Updated 2 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 5 years ago
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 4 years ago
- ☆10Updated 4 years ago
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated last year
- a Customized Proteogenomic Workflow for Neoantigen Prediction and Selection☆24Updated 3 years ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 8 years ago
- A Shiny web server for interactive visualization and analysis of RNA-seq data☆23Updated 4 years ago
- Universal RObust Peak Annotator☆16Updated last year
- ☆47Updated 2 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data☆12Updated 2 years ago
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Project☆13Updated last year
- Processing of single cell RNAseq data for the recovery of TCRs in python☆28Updated 4 years ago
- ☆19Updated 2 years ago
- BAGEL software☆27Updated last year
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Updated 4 years ago
- Analysis for svaseq paper☆19Updated 10 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- ☆23Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago