GfellerLab / MixMHCpred
HLA-I ligand predictor
☆33Updated 2 months ago
Alternatives and similar repositories for MixMHCpred:
Users that are interested in MixMHCpred are comparing it to the libraries listed below
- HLA-II ligand predictor.☆41Updated last year
- Python package and command line tool for epitope prediction☆51Updated 7 months ago
- PRedictor of IMmunogenic Epitopes☆17Updated 9 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆65Updated last year
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆31Updated 2 years ago
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago
- ERGO is a deep learing based model for predicting TCR-peptide binding.☆17Updated 2 years ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆26Updated 10 months ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆30Updated last week
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆15Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆50Updated 10 months ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆44Updated 5 years ago
- predicting peptide and TCR interaction☆20Updated 4 years ago
- A Python tool for prediction MHC ligand☆33Updated 6 years ago
- ☆14Updated 3 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆37Updated last week
- ☆37Updated last year
- MHC Class I and Class II neoantigen binding prediction☆28Updated last year
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆17Updated 2 years ago
- ☆71Updated last year
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆18Updated 2 months ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆29Updated last year
- python tools for TCR:peptide-MHC modeling and analysis☆71Updated 11 months ago
- Package to Score Sequences using Rule Set 3☆11Updated last year
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆33Updated 2 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆42Updated last week
- ☆38Updated 4 years ago
- Python interface to running command-line and web-based MHC binding predictors☆94Updated 5 months ago
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆42Updated 2 weeks ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆78Updated 2 years ago