HLA-I ligand predictor
☆43Sep 24, 2025Updated 5 months ago
Alternatives and similar repositories for MixMHCpred
Users that are interested in MixMHCpred are comparing it to the libraries listed below
Sorting:
- HLA-II ligand predictor.☆46Apr 6, 2023Updated 2 years ago
- PRedictor of IMmunogenic Epitopes☆27Sep 24, 2025Updated 5 months ago
- MHCAttnNet: Allele-Peptide predictions for class I & class II MHC alleles☆30Feb 14, 2021Updated 5 years ago
- TLimmuno2: predicting MHC class II antigen immunogenicity through transfer learning☆12Jun 19, 2023Updated 2 years ago
- ☆14Nov 3, 2021Updated 4 years ago
- Peptide-MHC I binding affinity prediction☆232Feb 17, 2026Updated last week
- ImmuneApp for HLA-I epitope prediction and immunopeptidome analysis☆14Sep 21, 2024Updated last year
- ☆22Oct 4, 2022Updated 3 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆38Nov 14, 2021Updated 4 years ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- Amino acid embedding and Convolutional Neural Network for HLA Class I-peptide binding prediction☆26Aug 3, 2017Updated 8 years ago
- DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions☆11Jul 8, 2021Updated 4 years ago
- Pipeline to detect HLA disruption from WES and RNAseq data☆22Feb 17, 2025Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆60Dec 17, 2025Updated 2 months ago
- A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides…☆44Mar 25, 2023Updated 2 years ago
- A Python tool for prediction MHC ligand☆34Feb 10, 2019Updated 7 years ago
- ☆12Jun 13, 2024Updated last year
- NeoDisc - A computational pipeline for the identification and prioritization of immunogenic tumor-specific HLA-I and -II antigens from ge…☆13Oct 8, 2024Updated last year
- ☆23May 31, 2022Updated 3 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆76Apr 1, 2023Updated 2 years ago
- DeepNovo workflow of neoantigen discovery by personalized de novo sequencing.☆12Nov 26, 2020Updated 5 years ago
- Python package and command line tool for epitope prediction☆52Aug 2, 2024Updated last year
- Use machine learning to design codon-optimized DNA sequences for increased protein expression.☆15Sep 27, 2022Updated 3 years ago
- ☆169Updated this week
- R package – HLA Genotype Imputation with Attribute Bagging (development version only)☆31May 24, 2025Updated 9 months ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆29Aug 10, 2021Updated 4 years ago
- Software for Ontogenic aNalysis of Antibody Repertoires☆19Sep 25, 2025Updated 5 months ago
- A reporting pipeline for visualization of immunopeptidomics MS data.☆15Nov 19, 2022Updated 3 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- Github for files currently published in the IPD-MHC FTP Directory hosted at the European Bioinformatics Institute☆16Jan 8, 2026Updated last month
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆170Dec 24, 2023Updated 2 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆89Jun 14, 2022Updated 3 years ago
- ☆16Oct 1, 2024Updated last year
- TEINet: a deep learning framework for prediction of TCR-epitope binding specificity☆16Jun 30, 2023Updated 2 years ago
- R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.☆15Sep 21, 2020Updated 5 years ago
- A sequence-based pan model for peptide-MHC I binding affinity prediction.☆26Apr 25, 2019Updated 6 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆34Jan 27, 2026Updated last month
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- Parsing MHC nomenclature in the wild☆18Feb 15, 2026Updated 2 weeks ago