Alternatives and similar repositories for MixMHCpred

Users that are interested in MixMHCpred are comparing it to the libraries listed below

• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆44Updated 2 years ago
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆24Updated 3 months ago
• TRON-Bioinformatics / TCLP
  an online cancer cell line catalogue integrating HLA type, predicted neo-epitopes, virus and gene expression
  ☆11Updated last year
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆72Updated 2 years ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆42Updated 3 weeks ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year
• denisbeslic / denovopipeline
  Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.
  ☆41Updated last year
• IdoSpringer / ERGO-II
  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
  ☆33Updated 3 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆52Updated last year
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆98Updated 10 months ago
• ntranoslab / esm-variants
  ☆77Updated last year
• Genentech / Absolve
  Absolve antibody variable domain sequence analysis
  ☆18Updated 6 years ago
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆40Updated last month
• GreiffLab / immuneSIM
  ☆38Updated last year
• KarchinLab / mhcnuggets
  MHC Class I and Class II neoantigen binding prediction
  ☆30Updated last month
• schumacherlab / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆28Updated 4 months ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆35Updated 3 years ago
• antigenomics / tcren-ms
  📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
  ☆19Updated 2 weeks ago
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆49Updated last year
• GfellerLab / MixTCRpred
  Predictor of TCR-epitope interactions
  ☆30Updated 7 months ago
• uclahs-cds / package-moPepGen
  Multi-Omics Peptide Generator
  ☆23Updated this week
• Sanofi-Public / RiboNN
  RiboNN: predicting translation efficiencies from mRNA sequences
  ☆32Updated last month
• moss-lab / ScanFold
  ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…
  ☆19Updated 2 years ago
• johli / seqprop
  Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor
  ☆48Updated last year
• castillohair / paper-5utr-design
  Code for "Optimizing 5’UTRs for mRNA-delivered gene editing using deep learning"
  ☆22Updated last year
• GfellerLab / MoDec
  Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.
  ☆13Updated 6 months ago
• MannLabs / structuremap
  Python package for investigating the structural context of PTMs
  ☆28Updated 7 months ago
• nf-core / epitopeprediction
  A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
  ☆48Updated last month
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆19Updated 2 years ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆34Updated 2 years ago