Alternatives and similar repositories for EarlGrey

Users that are interested in EarlGrey are comparing it to the libraries listed below

• jtlovell / GENESPACE
  ☆209Updated 4 months ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆225Updated 4 months ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆202Updated last year
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆306Updated last month
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆189Updated last month
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆133Updated 3 months ago
• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆213Updated last month
• wdecoster / chopper
  ☆194Updated last month
• c-zhou / yahs
  Yet another Hi-C scaffolding tool
  ☆153Updated 7 months ago
• ncbi / egapx
  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
  ☆135Updated 2 months ago
• HuiyangYu / PanDepth
  An ultra-fast and efficient genomic tool for coverage calculation
  ☆149Updated 2 months ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆185Updated last year
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆138Updated this week
• SunPengChuan / wgdi
  WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
  ☆138Updated 5 months ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆138Updated 3 years ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆126Updated 9 months ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆173Updated 4 years ago
• tangerzhang / ALLHiC
  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
  ☆177Updated 7 months ago
• qiao-xin / DupGen_finder
  A pipeline used to identify different modes of duplicated gene pairs
  ☆102Updated 2 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆164Updated last year
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆214Updated last month
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆156Updated 3 years ago
• epi2me-labs / wf-human-variation
  ☆126Updated 3 weeks ago
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆191Updated 2 weeks ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆182Updated 3 weeks ago
• aidenlab / 3d-dna
  3D de novo assembly (3D DNA) pipeline
  ☆212Updated last year
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆171Updated 4 years ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆256Updated 3 weeks ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆150Updated 2 years ago
• zengxiaofei / HapHiC
  HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
  ☆199Updated 2 weeks ago