Alternatives and similar repositories for EarlGrey:

Users that are interested in EarlGrey are comparing it to the libraries listed below

• huangnengCSU / compleasm
  A genome completeness evaluation tool based on miniprot
  ☆203Updated last month
• jtlovell / GENESPACE
  ☆204Updated 2 months ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆200Updated last year
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆220Updated 3 months ago
• c-zhou / yahs
  Yet another Hi-C scaffolding tool
  ☆143Updated 5 months ago
• hewm2008 / NGenomeSyn
  Any Way to Show Multi genomic Synteny
  ☆178Updated last week
• aaranyue / quarTeT
  A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification
  ☆128Updated 3 weeks ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆302Updated last week
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆173Updated 3 years ago
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆147Updated 3 years ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆160Updated last year
• zengxiaofei / HapHiC
  HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
  ☆181Updated this week
• ncbi / egapx
  Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation
  ☆129Updated last week
• wdecoster / chopper
  ☆183Updated 3 weeks ago
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆131Updated 2 months ago
• OpenGene / fastplong
  Ultra-fast preprocessing and quality control for long-read sequencing data
  ☆122Updated 2 months ago
• oushujun / LTR_retriever
  LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…
  ☆199Updated 3 weeks ago
• marbl / SALSA
  SALSA: A tool to scaffold long read assemblies with Hi-C data
  ☆184Updated 10 months ago
• nanoporetech / modkit
  A bioinformatics tool for working with modified bases
  ☆185Updated this week
• SunPengChuan / wgdi
  WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes
  ☆135Updated 3 months ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆179Updated last month
• chenlianfu / geta
  ☆78Updated 9 months ago
• cgroza / GraffiTE
  GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …
  ☆177Updated 2 weeks ago
• marbl / ModDotPlot
  ☆142Updated 2 weeks ago
• mkirsche / Jasmine
  Jasmine: SV Merging Across Samples
  ☆209Updated 3 months ago
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆149Updated 2 years ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆115Updated 9 months ago
• lh3 / pangene
  Constructing a pangenome gene graph
  ☆184Updated 2 weeks ago
• qiao-xin / DupGen_finder
  A pipeline used to identify different modes of duplicated gene pairs
  ☆98Updated last month
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆127Updated this week