TobyBaril / EarlGreyLinks
Earl Grey: A fully automated TE curation and annotation pipeline
☆181Updated 3 weeks ago
Alternatives and similar repositories for EarlGrey
Users that are interested in EarlGrey are comparing it to the libraries listed below
Sorting:
- ☆218Updated 8 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆172Updated last year
- A genome completeness evaluation tool based on miniprot☆222Updated 3 weeks ago
- Fast and accurately polish the genome generated by long reads.☆234Updated 9 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆162Updated 2 months ago
- Any Way to Show Multi genomic Synteny☆204Updated 3 months ago
- ☆212Updated 2 weeks ago
- Generate an interactive dot plot from mummer or minimap alignments☆209Updated last year
- Version 5 of the CAFE phylogenetics software☆149Updated 8 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆188Updated 5 months ago
- Ultra-fast preprocessing and quality control for long-read sequencing data☆185Updated last month
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆210Updated 3 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆151Updated 2 months ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆130Updated 11 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆195Updated 3 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆176Updated 5 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆220Updated last year
- oxford dot plots☆158Updated this week
- Tool to plot synteny and structural rearrangements between genomes☆324Updated 6 months ago
- haplotypic duplication identification tool☆259Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- Constructing a pangenome gene graph☆195Updated 2 months ago
- HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1 or R9.4.1 reads (read length of …☆231Updated 3 weeks ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆147Updated 8 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 2 months ago
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆200Updated last week
- A bioinformatics tool for working with modified bases☆214Updated last month
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆158Updated 2 years ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆205Updated last year