xuzhougeng / wgapLinks
Whole Genome Annotation Pipeline
☆16Updated 4 months ago
Alternatives and similar repositories for wgap
Users that are interested in wgap are comparing it to the libraries listed below
Sorting:
- ☆14Updated 3 years ago
- ☆24Updated 2 years ago
- ☆29Updated 2 years ago
- ☆16Updated 5 years ago
- The GitHub repository for the A. thaliana pan-NLR'ome project.☆18Updated 6 years ago
- Inferring natural selection by comparative population genomic analysis across species☆25Updated 2 years ago
- ☆15Updated last year
- This is used to achieve haplotype-resolved assembly of tetraploid genomes using gamete sequencings☆12Updated 4 years ago
- The IntroBlocker ancestry inference algorithm☆16Updated 2 years ago
- Convert RepeatMasker ".out" file into a gff3 with colors!!!☆22Updated 5 years ago
- Identification of transposable element insertion polymorphisms (TIPs) based on a pan-genome and large-scale resequencing data☆13Updated 3 years ago
- Dynamic Elongation of a Genome Assembly Path☆22Updated last year
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- ☆27Updated 2 months ago
- The tools are used for displaying hic signal of genome☆24Updated 4 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Scripts of population genomics analysis☆36Updated 7 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆32Updated this week
- ☆16Updated 2 years ago
- A pipeline for genomic variant detection with genome assemblies at population scale☆29Updated 4 months ago
- read and analyse RepeatMasker output☆26Updated 2 years ago
- Construct and Analyze the North American Vitis pangenome☆25Updated 2 months ago
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆27Updated last year
- Pan-genome Construction and Population Structure Variation Calling pipeline☆44Updated last year
- Scripts that used in our chicken T2T manuscript.☆22Updated 2 years ago
- ☆16Updated last year
- SINE annotation tool for plant genomes☆18Updated last year
- Newick tree processing☆12Updated last week
- Integrate multiple genome assemblies into a pangenome graph☆35Updated 3 years ago