Whole Genome Annotation Pipeline
☆16Jun 20, 2025Updated last year
Alternatives and similar repositories for wgap
Users that are interested in wgap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆32Apr 2, 2026Updated 4 months ago
- Annotate Olfactory receptor CDS from genome☆11Apr 29, 2023Updated 3 years ago
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2024Updated last year
- ☆13Nov 15, 2017Updated 8 years ago
- Dynamic Elongation of a Genome Assembly Path☆28Jul 27, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆15Feb 22, 2022Updated 4 years ago
- Plant genome assembly and annotation pipeline using snakemake☆55May 14, 2025Updated last year
- zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.☆18Updated this week
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- several scripts for bioinformatics☆25Nov 27, 2025Updated 8 months ago
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 4 years ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- a software for annotating plant genes☆24Dec 22, 2023Updated 2 years ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆207Apr 27, 2026Updated 3 months ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Mar 17, 2025Updated last year
- Study of TE evolution in a population of genomes☆10Dec 11, 2023Updated 2 years ago
- Repository for scripts used in barley pan-genome graph construction with Minigraph☆15Oct 15, 2025Updated 10 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆37Sep 30, 2024Updated last year
- Tools for working with agp files☆19Jun 26, 2025Updated last year
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- Bash scripts and data used in pantranscriptomic paper☆24Oct 21, 2022Updated 3 years ago
- ☆41Jun 8, 2023Updated 3 years ago
- Some useful bioinformatics pipelines for genomics analysis☆14May 25, 2021Updated 5 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆40Oct 29, 2025Updated 9 months ago
- Scripts used to perform analyses in Rice et al. (2023)☆16Dec 28, 2023Updated 2 years ago
- A tutorial on how to annotate and interpret novel mammalian reference genomes☆29Updated this week
- biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute☆76Jul 31, 2026Updated 2 weeks ago
- Here, we report telomere-to-telomere (T2T) gap-free genomes for domesticated pepper Capsicum annuum and wild relative Capsicum rhomboideu…☆13Feb 18, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- Phylogenetic Analysis of Long Terminal Repeat Retrotransposons☆18Oct 4, 2022Updated 3 years ago
- I often use some of the self-written programs.☆16Jun 12, 2026Updated 2 months ago
- Assemble and following pipeline used in wisent genome paper.☆17Dec 23, 2016Updated 9 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- ☆16Apr 9, 2021Updated 5 years ago
- A genome-scale, fast, and precise segmental duplications mapping tool☆36Sep 11, 2024Updated last year