Whole Genome Annotation Pipeline
☆16Jun 20, 2025Updated last year
Alternatives and similar repositories for wgap
Users that are interested in wgap are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is a workflow that combines multiple software, mainly for whole genome annotation of eukaryotes.☆32Apr 2, 2026Updated 7 months ago
- Dynamic Elongation of a Genome Assembly Path☆32Oct 26, 2026Updated last week
- parallelLastz: Running Lastz in parallel☆18Sep 13, 2026Updated last month
- ☆11Oct 23, 2024Updated 2 years ago
- ☆16Feb 22, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆13Nov 15, 2017Updated 8 years ago
- Plant genome assembly and annotation pipeline using snakemake☆55May 14, 2025Updated last year
- Polyploid allele identification☆12Jul 8, 2025Updated last year
- several scripts for bioinformatics☆25Nov 27, 2025Updated 11 months ago
- A Hi-C scaffolding method☆22Dec 22, 2021Updated 4 years ago
- Data visualization with R☆12Dec 12, 2020Updated 5 years ago
- bash script to search for centromeric repeat patterns in PacBio data, using several current tools (trf and R)☆13Dec 1, 2016Updated 9 years ago
- Figures for the CHM13 T2T SD paper.☆12Sep 12, 2021Updated 5 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Oct 26, 2018Updated 8 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Some components that speed up and reduce resource cost for original ALLHiC☆15Jun 21, 2025Updated last year
- Repository for scripts used in barley pan-genome graph construction with Minigraph☆15Oct 15, 2025Updated last year
- Killifish genomics scripts☆12Feb 19, 2021Updated 5 years ago
- General analysis of HiC data, including compartment A/B, domains and loops.☆14Feb 17, 2023Updated 3 years ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆214Sep 28, 2026Updated last month
- a software for annotating plant genes☆24Dec 22, 2023Updated 2 years ago
- GCEN: an easy-to-use toolkit for Gene Co-Expression Network analysis and lncRNAs annotation☆22Mar 26, 2022Updated 4 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆36Jan 3, 2022Updated 4 years ago
- zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.☆33Oct 27, 2026Updated last week
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Custom scripts for monotreme genome project☆19Jan 12, 2021Updated 5 years ago
- Convergence analysis using relative rate and correcting for phylogenetic relatedness☆12Apr 25, 2025Updated last year
- optDNTRA: optimization of De Novo Transcriptome Rna-seq Assembly☆10Aug 21, 2025Updated last year
- Study of TE evolution in a population of genomes☆12Dec 11, 2023Updated 2 years ago
- scripts for the project of seven thaliana genomes assembly☆42May 22, 2021Updated 5 years ago
- Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.☆56Oct 20, 2026Updated 2 weeks ago
- ☆40Aug 8, 2025Updated last year
- Bash scripts and data used in pantranscriptomic paper☆25Oct 21, 2022Updated 4 years ago
- Code for TAD_SV project☆11Mar 16, 2022Updated 4 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Some useful bioinformatics pipelines for genomics analysis☆14May 25, 2021Updated 5 years ago
- Pipeline to detect PAVs (presence/absence variations) in genome comparison using whole genome alignment.☆31Mar 5, 2018Updated 8 years ago
- Simple tools for working with Hi-C data☆20Dec 19, 2018Updated 7 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute☆76Jul 31, 2026Updated 3 months ago
- ☆43Jun 8, 2023Updated 3 years ago
- ☆16Apr 9, 2021Updated 5 years ago
- ☆15May 3, 2023Updated 3 years ago