GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology
☆29Apr 11, 2025Updated last year
Alternatives and similar repositories for GeneMark-ETP
Users that are interested in GeneMark-ETP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆61Oct 27, 2023Updated 2 years ago
- Generation of OrthoDB protein sets for gene prediction experiments☆11Aug 8, 2024Updated last year
- Learning and Aligning Large Protein Families with support of protein language models.☆32Updated this week
- TSEBRA: Transcript Selector for BRAKER☆49Apr 7, 2026Updated 3 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- a gap-filling tools of genome in complex region.☆26Dec 30, 2025Updated 6 months ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 4 months ago
- Implementation of ToL genome assembly workflows☆32May 11, 2026Updated last month
- ☆26Dec 15, 2025Updated 6 months ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- source code for EVM☆126Nov 29, 2024Updated last year
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆19Oct 6, 2025Updated 9 months ago
- ☆23Mar 12, 2026Updated 3 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆32Mar 3, 2026Updated 4 months ago
- This is the standalone version of the EviAnn pipeline☆155Jun 24, 2026Updated 2 weeks ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆38May 9, 2024Updated 2 years ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆199Apr 27, 2026Updated 2 months ago
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- ☆93Jun 26, 2026Updated last week
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 3 months ago
- Using Deep Learning to predict gene annotations☆294Jul 1, 2026Updated last week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆465Jun 17, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆42May 19, 2025Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- ☆39Feb 22, 2023Updated 3 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- k-mer based assembly evaluation☆346May 21, 2026Updated last month
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆91Dec 3, 2025Updated 7 months ago
- PECAT, a phased error correct and assembly tool☆66Dec 8, 2025Updated 7 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆169Jun 3, 2026Updated last month
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- kmerfreq count K-mer (with size K) frequency from the input sequence data, typically sequencing reads data, and refe rence genome data is…☆20Mar 30, 2020Updated 6 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- ☆42Oct 6, 2025Updated 9 months ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 9 months ago
- ☆17Jun 15, 2026Updated 3 weeks ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago