GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology
☆29Apr 11, 2025Updated last year
Alternatives and similar repositories for GeneMark-ETP
Users that are interested in GeneMark-ETP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆61Oct 27, 2023Updated 2 years ago
- Generation of OrthoDB protein sets for gene prediction experiments☆11Aug 8, 2024Updated last year
- Learning and Aligning Large Protein Families with support of protein language models.☆32Jun 11, 2026Updated last week
- TSEBRA: Transcript Selector for BRAKER☆49Apr 7, 2026Updated 2 months ago
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆149Apr 13, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- a gap-filling tools of genome in complex region.☆26Dec 30, 2025Updated 5 months ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 3 months ago
- Implementation of ToL genome assembly workflows☆32May 11, 2026Updated last month
- ☆26Dec 15, 2025Updated 6 months ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- source code for EVM☆124Nov 29, 2024Updated last year
- Software GMATA for SSR mining, marker designing, genotyping, plot etc.☆19Oct 6, 2025Updated 8 months ago
- ☆23Mar 12, 2026Updated 3 months ago
- TransposonPSI involves a PSI-blast search of a protein or nucleotide sequence against a set of profiles of proteins corresponding to majo…☆14Apr 28, 2020Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆32Mar 3, 2026Updated 3 months ago
- This is the standalone version of the EviAnn pipeline☆151May 14, 2026Updated last month
- Pipeline for the identification of (coding) gene structures in draft genomes.☆37May 9, 2024Updated 2 years ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆197Apr 27, 2026Updated last month
- HiC-Hiker: A probabilistic model to determine contig orientation in chromosome-length scaffolds with Hi-C☆26Jan 14, 2021Updated 5 years ago
- ☆93Apr 7, 2026Updated 2 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆103Apr 7, 2026Updated 2 months ago
- Using Deep Learning to predict gene annotations☆292May 21, 2026Updated 3 weeks ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆463Apr 12, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- PECAT, a phased error correct and assembly tool☆65Dec 8, 2025Updated 6 months ago
- ☆42May 19, 2025Updated last year
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- ☆39Feb 22, 2023Updated 3 years ago
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- k-mer based assembly evaluation☆343May 21, 2026Updated 3 weeks ago
- Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement☆88Dec 3, 2025Updated 6 months ago
- A genomic k-mer counter (and sequence utility) with nice features.☆168Jun 3, 2026Updated 2 weeks ago
- Estimation of per-individual inbreeding coefficients under a probabilistic framework☆22Aug 8, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- kmerfreq count K-mer (with size K) frequency from the input sequence data, typically sequencing reads data, and refe rence genome data is…☆20Mar 30, 2020Updated 6 years ago
- Hybrid error correction approach for long reads using overlap graph☆11Sep 26, 2023Updated 2 years ago
- ☆41Oct 6, 2025Updated 8 months ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 8 months ago
- ☆17Updated this week
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- A novel genome assembly pipeline based on deep learning☆71Dec 2, 2024Updated last year