gatech-genemark / GeneMark-ETPLinks
GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology
☆25Updated 6 months ago
Alternatives and similar repositories for GeneMark-ETP
Users that are interested in GeneMark-ETP are comparing it to the libraries listed below
Sorting:
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆44Updated this week
- ☆29Updated last year
- A Nextflow pipeline for evaluating assembly quality☆37Updated 2 weeks ago
- ☆33Updated last year
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆37Updated 2 years ago
- Convergent substitution detection tool based on the PCOC model☆31Updated 3 years ago
- Computational Analysis of Gene Expression Evolution☆43Updated last month
- A program for assessing the T2T genome continuity☆87Updated 3 weeks ago
- TSEBRA: Transcript Selector for BRAKER☆48Updated 11 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- PSAURON is a machine learning model for rapid assessment of protein coding gene annotation☆40Updated 2 weeks ago
- ☆38Updated last week
- MCHelper: An automatic tool to curate transposable element libraries☆42Updated 3 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆82Updated 2 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆32Updated 3 years ago
- Multi-genome synteny block visualization tool☆47Updated 8 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- Tool for fully-automated inference of species trees from raw genome assemblies☆40Updated 4 months ago
- ☆33Updated 4 years ago
- Synteny Mapping and Analysis Program☆27Updated last week
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆26Updated 3 weeks ago
- Tools to process OrthoFinder output: Calculate the most common gene name of an orthogroup by majority vote and create plots analogous to …☆19Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆29Updated 3 years ago
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- Genome Annotation Pipeline☆36Updated last year
- Automatic evaluation of HGTs☆30Updated 8 months ago
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 8 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆35Updated 3 months ago