gatech-genemark / GeneMark-ETPLinks
GeneMark-ETP: gene finding in eukaryotic genomes supported by transcriptome sequencing and protein homology
☆22Updated last month
Alternatives and similar repositories for GeneMark-ETP
Users that are interested in GeneMark-ETP are comparing it to the libraries listed below
Sorting:
- MCHelper: An automatic tool to curate transposable element libraries☆36Updated last month
- A Nextflow pipeline for evaluating assembly quality☆34Updated last week
- PECAT, a phased error correct and assembly tool☆51Updated 2 weeks ago
- Annotation helper tool for the manual curation of transposable element consensus sequences☆48Updated 3 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆78Updated last month
- A program for assessing the T2T genome continuity☆77Updated last month
- TSEBRA: Transcript Selector for BRAKER☆47Updated 6 months ago
- ☆28Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆37Updated last month
- A organelle de novo genome assembly toolkit☆59Updated 3 months ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆33Updated 3 months ago
- Protein hint generation pipeline for gene finding in eukaryotic genomes☆57Updated last year
- Computational Analysis of Gene Expression Evolution☆41Updated last week
- Evaluate variant calls and its combination with k-mer multiplicity☆66Updated 2 years ago
- A tool for evaluate long-read de novo assembly results☆47Updated 9 months ago
- ☆35Updated last year
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated 2 years ago
- Minimizer-based assembly scaffolding and mapping using long reads☆42Updated 7 months ago
- Tiberius is a deep learning gene finder.☆61Updated this week
- perSVade: personalized Structural Variation detection☆39Updated 3 months ago
- STAG: Species Tree from All Genes☆34Updated 6 years ago
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- ☆32Updated 4 years ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆31Updated 3 years ago
- A comparative genomics workflow using Nextflow, conda, Julia and R☆44Updated last year
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆31Updated 4 years ago
- Genome Annotation Pipeline☆35Updated 9 months ago
- ☆40Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago