Alternatives and similar repositories for GeneMark-ETP

Users that are interested in GeneMark-ETP are comparing it to the libraries listed below

• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆37Updated 2 weeks ago
• JLSteenwyk / orthosnap
  a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees
  ☆26Updated last month
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆45Updated this week
• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated last year
• Rinoahu / SwiftOrtho
  A high performance tool to identify orthologs and paralogs across genomes.
  ☆27Updated 2 years ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆28Updated last month
• csoderlund / SyMAP
  Synteny Mapping and Analysis Program
  ☆29Updated last week
• i10labtitech / GINGER
  ☆29Updated last year
• PuttickMacroevolution / MCMCtreeR
  MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree
  ☆45Updated 5 years ago
• formbio / FLAG
  ☆33Updated last year
• JLSteenwyk / orthofisher
  a broadly applicable tool for automated gene identification and retrieval
  ☆32Updated 10 months ago
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆47Updated 2 weeks ago
• GonzalezLab / MCHelper
  MCHelper: An automatic tool to curate transposable element libraries
  ☆42Updated 3 months ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆43Updated 2 months ago
• CarineRey / pcoc
  Convergent substitution detection tool based on the PCOC model
  ☆31Updated 3 years ago
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆35Updated 4 months ago
• merlyescalona / yagcloser
  YAGCloser: Yet-Another-Gap-Closer based on spanning of long reads.
  ☆13Updated 2 years ago
• bcgsc / goldrush
  Linear-time de novo Long Read Assembler
  ☆41Updated last week
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆32Updated 5 years ago
• TurakhiaLab / ROADIES
  Tool for fully-automated inference of species trees from raw genome assemblies
  ☆41Updated 5 months ago
• davidemms / STAG
  STAG: Species Tree from All Genes
  ☆34Updated 6 years ago
• h836472 / ContScout
  ContScout sequence contamination filter tool
  ☆24Updated 5 months ago
• sanger-tol / genomeassembly
  Implementation of ToL genome assembly workflows
  ☆23Updated this week
• DessimozLab / edgehog
  Infering ancestral synteny with hierarchical orthologous groups
  ☆33Updated 2 weeks ago
• salzberg-lab / PSAURON
  PSAURON is a machine learning model for rapid assessment of protein coding gene annotation
  ☆41Updated last month
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆37Updated 8 months ago
• SunPengChuan / wgdi-example
  ☆21Updated 10 months ago
• mrvollger / NucFreq
  ☆38Updated 3 weeks ago
• HuffordLab / GenomeQC
  ☆33Updated 4 years ago
• shelkmike / Mabs
  Mabs, a genome assembly tool that optimizes parameters of Hifiasm and Flye
  ☆32Updated last month