hahnlab / CAFE5
Version 5 of the CAFE phylogenetics software
☆125Updated last week
Alternatives and similar repositories for CAFE5:
Users that are interested in CAFE5 are comparing it to the libraries listed below
- Any Way to Show Multi genomic Synteny☆173Updated 4 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆195Updated last year
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆120Updated 3 months ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆117Updated 3 years ago
- ☆198Updated 3 weeks ago
- A pipeline used to identify different modes of duplicated gene pairs☆95Updated 4 years ago
- A genome completeness evaluation tool based on miniprot☆190Updated 4 months ago
- ☆73Updated 7 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆90Updated last week
- Nanopore data assembler☆143Updated 2 years ago
- Fast and accurately polish the genome generated by long reads.☆217Updated last month
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆78Updated 3 years ago
- Reference-free profiling of polyploid genomes☆112Updated 7 months ago
- ☆171Updated last week
- NLR-Annotator upload☆63Updated last year
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆60Updated 4 months ago
- Constructing a pangenome gene graph☆181Updated 7 months ago
- Foreign Contamination Screening caller scripts and documentation☆122Updated 3 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆86Updated 3 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆174Updated last month
- Yet another Hi-C scaffolding tool☆140Updated 3 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆96Updated 10 months ago
- Get assembly statistics from FASTA and FASTQ files☆117Updated last year
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆166Updated 2 months ago
- SMC++ infers population history from whole-genome sequence data.☆159Updated last year
- Earl Grey: A fully automated TE curation and annotation pipeline☆156Updated 2 weeks ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆134Updated last month
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆167Updated 3 weeks ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆174Updated 4 months ago
- Code to compute the XP-CLR statistic to infer natural selection☆93Updated 2 years ago