hahnlab / CAFE5Links
Version 5 of the CAFE phylogenetics software
☆142Updated 6 months ago
Alternatives and similar repositories for CAFE5
Users that are interested in CAFE5 are comparing it to the libraries listed below
Sorting:
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆117Updated 4 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆127Updated 9 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆209Updated last year
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆109Updated last year
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆176Updated 3 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆99Updated 6 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆106Updated last month
- Constructing a pangenome gene graph☆195Updated 2 weeks ago
- ☆216Updated 7 months ago
- Get assembly statistics from FASTA and FASTQ files☆122Updated 2 years ago
- A genome completeness evaluation tool based on miniprot☆217Updated 3 months ago
- source code for EVM☆116Updated 9 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆186Updated 3 months ago
- Reference-free profiling of polyploid genomes☆121Updated 2 months ago
- Dfam Transposable Element Tools Docker container.☆100Updated last week
- Nanopore data assembler☆160Updated 3 years ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆140Updated last week
- oxford dot plots☆158Updated 2 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆117Updated 2 years ago
- NLR-Annotator upload☆71Updated 2 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆81Updated 4 years ago
- ☆82Updated last year
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆178Updated 10 months ago
- Any Way to Show Multi genomic Synteny☆201Updated last month
- ☆208Updated 3 weeks ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆191Updated 2 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆153Updated last month
- Foreign Contamination Screening caller scripts and documentation☆135Updated 5 months ago
- ☆27Updated 5 months ago