hahnlab / CAFE5Links
Version 5 of the CAFE phylogenetics software
☆136Updated 5 months ago
Alternatives and similar repositories for CAFE5
Users that are interested in CAFE5 are comparing it to the libraries listed below
Sorting:
- Reference-free profiling of polyploid genomes☆120Updated last month
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆108Updated last year
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆98Updated 6 months ago
- Generate an interactive dot plot from mummer or minimap alignments☆207Updated last year
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆116Updated 4 years ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆175Updated 3 months ago
- ☆213Updated 6 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆185Updated 2 months ago
- Get assembly statistics from FASTA and FASTQ files☆121Updated 2 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆126Updated 9 months ago
- A pipeline used to identify different modes of duplicated gene pairs☆105Updated 2 weeks ago
- source code for EVM☆114Updated 8 months ago
- Software for painlessly estimating average nucleotide diversity within and between populations☆140Updated this week
- A genome completeness evaluation tool based on miniprot☆216Updated 3 months ago
- ☆81Updated last year
- ☆27Updated 4 months ago
- NLR-Annotator upload☆69Updated 2 years ago
- Few scripts facilitating the extraction of info from Repeat Masker .out files☆81Updated 4 years ago
- Any Way to Show Multi genomic Synteny☆201Updated last month
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated 9 months ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆175Updated 7 months ago
- Nanopore data assembler☆158Updated 3 years ago
- Yet another Hi-C scaffolding tool☆158Updated 9 months ago
- Constructing a pangenome gene graph☆193Updated 2 months ago
- A library for running k-mers based GWAS☆112Updated 9 months ago
- SMC++ infers population history from whole-genome sequence data.☆168Updated last year
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆141Updated 7 months ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆94Updated 8 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆115Updated last year
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆189Updated last month