hillerlab / make_lastz_chainsLinks
Portable solution to generate genome alignment chains using lastz
☆57Updated 2 months ago
Alternatives and similar repositories for make_lastz_chains
Users that are interested in make_lastz_chains are comparing it to the libraries listed below
Sorting:
- ☆35Updated 2 weeks ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 5 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆34Updated 3 years ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 2 years ago
- ☆40Updated 2 years ago
- A shiny application to visualize MCscan result☆37Updated 2 years ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆29Updated 2 months ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆42Updated 10 months ago
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆67Updated 4 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆58Updated 2 years ago
- RepeatIdentifier☆67Updated 4 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆33Updated 10 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆38Updated this week
- TSEBRA: Transcript Selector for BRAKER☆47Updated 8 months ago
- Plant genome assembly and annotation pipeline using snakemake☆44Updated 2 months ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated 3 months ago
- Scripts to analyze data using TreeMix. This pipeline runs TreeMix with bootstrapping, helps choose number of migration events and creates…☆35Updated last year
- ☆31Updated 4 months ago
- A fast tool for detecting and decomposing segmental duplications in genome assemblies☆49Updated 2 weeks ago
- Accompanying repository for our publications on manual curation methods for Transposable Elements.☆21Updated last year
- ☆30Updated 7 months ago
- ☆50Updated last month
- ☆44Updated 8 years ago
- The stairway plot is a method for inferring detailed population demographic history using the site frequency spectrum (SFS) from DNA sequ…☆48Updated 2 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆46Updated 2 months ago
- ☆28Updated last year
- Genome Annotation Pipeline☆36Updated 11 months ago
- A rapid and accurate ensemble pipeline for graph-based variant genotyping with lower depth of short reads☆48Updated 3 months ago
- A organelle de novo genome assembly toolkit☆62Updated 5 months ago
- Toolkit for evolutionary analyses of linkage groups☆32Updated last year