hillerlab / make_lastz_chainsLinks
Portable solution to generate genome alignment chains using lastz
☆60Updated 3 weeks ago
Alternatives and similar repositories for make_lastz_chains
Users that are interested in make_lastz_chains are comparing it to the libraries listed below
Sorting:
- A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats☆69Updated 4 years ago
- A shiny application to visualize MCscan result☆38Updated 3 years ago
- ☆41Updated 2 years ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Updated 11 months ago
- A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files☆36Updated 3 years ago
- ☆43Updated 5 months ago
- A quick user guide for de novo transposable element (TE) library generation and TE screening. Utilising; the Extensive de novo TE Annotat…☆27Updated 3 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆59Updated 2 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆45Updated last year
- Multi-genome synteny block visualization tool☆52Updated last week
- Plant genome assembly and annotation pipeline using snakemake☆52Updated 8 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆36Updated last year
- TSEBRA: Transcript Selector for BRAKER☆49Updated 2 months ago
- ☆45Updated 9 years ago
- ☆32Updated last year
- RepeatIdentifier☆71Updated 10 months ago
- A tool for performing collinearity-incorporating homology inference☆33Updated 2 years ago
- ☆45Updated 3 years ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆40Updated last week
- scripts for the project of seven thaliana genomes assembly☆42Updated 4 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆51Updated last month
- An R package to visualize chromosome scale repeat patterns and predict centromere locations.☆43Updated 2 months ago
- ☆54Updated 7 months ago
- Genome Annotation Pipeline☆42Updated last year
- Likelihood-based Selective Sweep Detection☆40Updated 2 years ago
- C-Phasing/CPhasing: Phasing and scaffolding polyploid genomes based on Pore-C, HiFi-C/CiFi or Hi-C.☆82Updated this week
- HELIANO is a software for detection and classification of Helitron-like elements.☆32Updated 7 months ago
- R package to draw syntenic plots in 3 different styles☆42Updated 4 months ago
- This is a method to find telomeres and centromeres in plants.☆42Updated 2 years ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆31Updated 8 months ago