Alternatives and similar repositories for Genome-annotation-pipeline:

Users that are interested in Genome-annotation-pipeline are comparing it to the libraries listed below

• Jwindler / AutoHiC
  A novel genome assembly pipeline based on deep learning
  ☆60Updated 2 months ago
• HongboDoll / TomatoSuperPanGenome
  Here, we sequence and de novo assemble chromosome-scale genomes of nine wild species and two cultivated accessions of tomato and construc…
  ☆50Updated 8 months ago
• chenlianfu / geta
  ☆73Updated 7 months ago
• fanagislab / GCE
  GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size, genomic repeat content and the heterozygsis…
  ☆48Updated 4 years ago
• BGI-shenzhen / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆86Updated 3 months ago
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆63Updated last year
• YangJianshun / LINKVIEW2
  DNA序列比对结果 可视化展示工具
  ☆45Updated 2 years ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆78Updated 3 years ago
• moshi4 / CafePlotter
  A tool for plotting CAFE5 gene family expansion/contraction result
  ☆27Updated last year
• xuzhougeng / Genomic_tools
  Genomic related tools
  ☆71Updated 3 years ago
• Sunhh / NGS_data_processing
  Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.
  ☆52Updated this week
• PlantGeneticsLab / TIGER
  Toolkits Integrated for Genetic and Evolutionary Research
  ☆15Updated 11 months ago
• tsackton / ratite-genomics
  Scripts and other material for the assembly and analysis of ratite genomes.
  ☆26Updated 2 years ago
• JiaoLab2021 / varigraph
  An accurate and widely applicable pangenome graph-based variant genotyper for diploid and polyploid genomes
  ☆14Updated 2 weeks ago
• LiLabAtVT / DeepTE
  Neural network classification of TE
  ☆87Updated 2 years ago
• JiaoLaboratory / CRAQ
  Identification of errors in draft genome assemblies with single-base pair resolution for quality assessment and improvement
  ☆58Updated last month
• zhaotao1987 / SynNet-Pipeline
  Workflow for Building Microsynteny Networks
  ☆50Updated 2 years ago
• hwc2021 / GSAT
  Graph-based Sequence Assembly Toolkit
  ☆19Updated 3 months ago
• yjx1217 / RMRB
  This is an archive version of old RepBase library (v20170127) for RepeatMasker.
  ☆29Updated 3 years ago
• qiao-xin / DupGen_finder
  A pipeline used to identify different modes of duplicated gene pairs
  ☆95Updated 4 years ago
• oushujun / LTR_FINDER_parallel
  A parallel wrapper for LTR_FINDER
  ☆49Updated last year
• hewm2008 / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆38Updated 3 months ago
• molevol-ub / bitacora
  BITACORA: A Bioinformatics tool for gene family annotation
  ☆43Updated 10 months ago
• wk8910 / bio_tools
  Useful bioinformatic scripts
  ☆54Updated 2 months ago
• hewm2008 / VCF2Dis
  VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files
  ☆36Updated 2 weeks ago
• YuSugihara / MutMap
  MutMap pipeline to identify causative mutations responsible for a phenotype
  ☆52Updated 3 weeks ago
• chensole / bioinformatics
  ☆13Updated 4 years ago
• phasegenomics / juicebox_scripts
  A collection of scripts for working with Hi-C data, Juicebox, and other genomic file formats
  ☆65Updated 3 years ago
• dePamphilis / PlantTribes
  PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics
  ☆35Updated last year
• hewm2008 / VCF2PCACluster
  A new simple and efficient software to PCA and Cluster For popolation VCF File
  ☆68Updated 2 weeks ago