Any Way to Show Multi genomic Synteny
☆230Jul 4, 2025Updated last year
Alternatives and similar repositories for NGenomeSyn
Users that are interested in NGenomeSyn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆46May 23, 2026Updated last month
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆113May 23, 2026Updated last month
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆41Jun 29, 2026Updated last week
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆176Jun 23, 2026Updated last week
- A genome completeness evaluation tool based on miniprot☆250Jun 20, 2026Updated 2 weeks ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Tool to plot synteny and structural rearrangements between genomes☆348Apr 7, 2025Updated last year
- Synteny and Rearrangement Identifier☆474Updated this week
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆272Jun 22, 2026Updated 2 weeks ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆111Jul 23, 2024Updated last year
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆206Nov 23, 2025Updated 7 months ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 4 months ago
- Extensive de-novo TE Annotator☆455May 12, 2026Updated last month
- An ultra-fast and efficient genomic tool for coverage calculation☆172Jun 9, 2026Updated 3 weeks ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆919Jun 21, 2026Updated 2 weeks ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Repeat-aware polishing genomes assembled using HiFi long reads☆105Apr 7, 2026Updated 2 months ago
- High-precision TE Annotator☆160Dec 4, 2025Updated 7 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆197May 11, 2025Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆217Updated this week
- Detecting multi-genome synteny using minimizer graph mapping☆108Jun 12, 2026Updated 3 weeks ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆567Feb 14, 2024Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆241Sep 6, 2024Updated last year
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆30Aug 15, 2024Updated last year
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆292Oct 4, 2025Updated 9 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Identify and find telomeres, or telomeric repeats in a genome.☆170Nov 24, 2025Updated 7 months ago
- source code for EVM☆126Nov 29, 2024Updated last year
- An accurate GFF3/GTF lift over pipeline☆546Aug 1, 2023Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- Official home of genome aligner based upon notion of Cactus graphs☆690Jun 23, 2026Updated last week
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆194Oct 15, 2025Updated 8 months ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆58Jun 20, 2026Updated 2 weeks ago
- ☆195Feb 10, 2026Updated 4 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆788May 31, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆125Jun 18, 2026Updated 2 weeks ago
- Genome alignment and synteny plots☆35Mar 24, 2026Updated 3 months ago
- A genome assembly assessment pipeline.☆38Jun 5, 2026Updated last month
- This is the standalone version of the EviAnn pipeline☆155Jun 24, 2026Updated last week
- ☆42Oct 6, 2025Updated 8 months ago
- ☆162Apr 13, 2026Updated 2 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆199Apr 27, 2026Updated 2 months ago