hewm2008 / NGenomeSynView external linksLinks
Any Way to Show Multi genomic Synteny
☆217Jul 4, 2025Updated 7 months ago
Alternatives and similar repositories for NGenomeSyn
Users that are interested in NGenomeSyn are comparing it to the libraries listed below
Sorting:
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆102Jul 23, 2024Updated last year
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆43Jan 14, 2026Updated last month
- A genome completeness evaluation tool based on miniprot☆233Sep 18, 2025Updated 4 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆164Oct 29, 2025Updated 3 months ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆254Jan 5, 2026Updated last month
- A program for assessing the T2T genome continuity☆92Dec 14, 2025Updated 2 months ago
- Tool to plot synteny and structural rearrangements between genomes☆341Apr 7, 2025Updated 10 months ago
- Synteny and Rearrangement Identifier☆447Apr 29, 2025Updated 9 months ago
- Repeat-aware polishing genomes assembled using HiFi long reads☆98Nov 12, 2025Updated 3 months ago
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆203Nov 23, 2025Updated 2 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆191May 11, 2025Updated 9 months ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆184Oct 15, 2025Updated 3 months ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆231Sep 6, 2024Updated last year
- Extensive de-novo TE Annotator☆429Oct 12, 2025Updated 4 months ago
- High-precision TE Annotator☆150Dec 4, 2025Updated 2 months ago
- An ultra-fast and efficient genomic tool for coverage calculation☆169Updated this week
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆37Feb 12, 2025Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆554Feb 14, 2024Updated 2 years ago
- Identify and find telomeres, or telomeric repeats in a genome.☆158Nov 24, 2025Updated 2 months ago
- Detecting multi-genome synteny using minimizer graph mapping☆101Updated this week
- source code for EVM☆122Nov 29, 2024Updated last year
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆109Jan 14, 2026Updated last month
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆31Jan 3, 2022Updated 4 years ago
- An accurate GFF3/GTF lift over pipeline☆526Aug 1, 2023Updated 2 years ago
- The MafFilter genome alignment processor☆19Jan 6, 2026Updated last month
- Official home of genome aligner based upon notion of Cactus graphs☆652Updated this week
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆276Oct 4, 2025Updated 4 months ago
- This is the standalone version of the EviAnn pipeline☆136Feb 5, 2026Updated last week
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆215Jun 25, 2025Updated 7 months ago
- A genome assembly assessment pipeline.☆37Nov 20, 2023Updated 2 years ago
- haplotypic duplication identification tool☆275Oct 30, 2025Updated 3 months ago
- Evaluation and polishing workflows for T2T genome assemblies☆146Jul 7, 2025Updated 7 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆736Mar 18, 2025Updated 10 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆889Dec 22, 2025Updated last month
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆122Jun 3, 2025Updated 8 months ago
- Yet another Hi-C scaffolding tool☆170Nov 4, 2024Updated last year
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆181Dec 16, 2025Updated last month
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆28Aug 15, 2024Updated last year
- ☆180Updated this week