Any Way to Show Multi genomic Synteny
☆229Jul 4, 2025Updated 11 months ago
Alternatives and similar repositories for NGenomeSyn
Users that are interested in NGenomeSyn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆46May 23, 2026Updated 3 weeks ago
- Multi-level visualization of genomic statistical variables on rectangular chromosomes☆112May 23, 2026Updated 3 weeks ago
- wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication☆41May 27, 2026Updated 2 weeks ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆175Updated this week
- A genome completeness evaluation tool based on miniprot☆245Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Tool to plot synteny and structural rearrangements between genomes☆348Apr 7, 2025Updated last year
- Synteny and Rearrangement Identifier☆473May 20, 2026Updated 3 weeks ago
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆271Jan 5, 2026Updated 5 months ago
- Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).☆111Jul 23, 2024Updated last year
- TOGA (Tool to infer Orthologs from Genome Alignments): implements a novel paradigm to infer orthologous genes. TOGA integrates gene annot…☆207Nov 23, 2025Updated 6 months ago
- A program for assessing the T2T genome continuity and completeness☆95Feb 28, 2026Updated 3 months ago
- Extensive de-novo TE Annotator☆448May 12, 2026Updated last month
- An ultra-fast and efficient genomic tool for coverage calculation☆171Jun 9, 2026Updated last week
- High-precision TE Annotator☆160Dec 4, 2025Updated 6 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Python library to facilitate genome assembly, annotation, and comparative genomics☆917May 2, 2026Updated last month
- Repeat-aware polishing genomes assembled using HiFi long reads☆103Apr 7, 2026Updated 2 months ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆197May 11, 2025Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆216May 12, 2026Updated last month
- Detecting multi-genome synteny using minimizer graph mapping☆107Jun 5, 2026Updated last week
- Tools for fast and flexible genome assembly scaffolding and improvement☆566Feb 14, 2024Updated 2 years ago
- A gap-closing software tool that uses long reads to enhance genome assembly.☆240Sep 6, 2024Updated last year
- PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format(VCF) files☆30Aug 15, 2024Updated last year
- MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!☆289Oct 4, 2025Updated 8 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Identify and find telomeres, or telomeric repeats in a genome.☆165Nov 24, 2025Updated 6 months ago
- source code for EVM☆124Nov 29, 2024Updated last year
- An accurate GFF3/GTF lift over pipeline☆545Aug 1, 2023Updated 2 years ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆34Jan 3, 2022Updated 4 years ago
- Official home of genome aligner based upon notion of Cactus graphs☆685May 26, 2026Updated 2 weeks ago
- Sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation☆194Oct 15, 2025Updated 8 months ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆57Jun 5, 2026Updated last week
- ☆191Feb 10, 2026Updated 4 months ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆783May 31, 2026Updated 2 weeks ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆123Apr 28, 2026Updated last month
- Genome alignment and synteny plots☆35Mar 24, 2026Updated 2 months ago
- A genome assembly assessment pipeline.☆38Jun 5, 2026Updated last week
- This is the standalone version of the EviAnn pipeline☆151May 14, 2026Updated last month
- ☆41Oct 6, 2025Updated 8 months ago
- ☆162Apr 13, 2026Updated 2 months ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆197Apr 27, 2026Updated last month