ncbi / fcsLinks
Foreign Contamination Screening caller scripts and documentation
☆130Updated 3 months ago
Alternatives and similar repositories for fcs
Users that are interested in fcs are comparing it to the libraries listed below
Sorting:
- Nanopore data assembler☆156Updated 3 years ago
- Create a tree using Mash distances☆166Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆128Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆147Updated this week
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆106Updated 3 weeks ago
- MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.☆160Updated 2 weeks ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆183Updated last month
- a short-read polishing tool for long-read assemblies☆170Updated last year
- ☆198Updated 2 months ago
- A fast whole-genome aligner based on de Bruijn graphs☆150Updated 4 months ago
- Reference-free profiling of polyploid genomes☆117Updated 2 weeks ago
- Metagenomic classification of long-read sequencing data☆85Updated last month
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated last year
- Version 5 of the CAFE phylogenetics software☆134Updated 4 months ago
- A tool for Racon polishing of miniasm assemblies☆76Updated 3 weeks ago
- Assemble bacterial isolate genomes from Nanopore reads☆127Updated 5 months ago
- A pipeline for running AMRfinderPlus and collating results into functional classes☆78Updated 10 months ago
- Interactive quality assessment of genome assemblies☆100Updated last month
- A genome completeness evaluation tool based on miniprot☆213Updated last month
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆116Updated 3 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆204Updated 2 years ago
- A toolbox for comparative genomics.☆104Updated 4 years ago
- Comparison of multiple long read datasets☆134Updated last month
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆125Updated 7 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆137Updated last year
- SKESA assembler☆119Updated 8 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆104Updated last year
- GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the sc…☆146Updated 4 months ago
- De novo assembly from Oxford Nanopore reads.☆83Updated 3 weeks ago
- DDBJ Fast Annotation and Submission Tool☆79Updated last month