Alternatives and similar repositories for SynGAP:

Users that are interested in SynGAP are comparing it to the libraries listed below

• amsession / Kmer-based-Subgenome-Mapping
  ☆20Updated 8 months ago
• i10labtitech / GINGER
  ☆27Updated last year
• lardo / khaper
  ☆27Updated 2 years ago
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆43Updated last year
• simon19891216 / CentIER
  ☆29Updated 7 months ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• ShiuLab / PseudogenePipeline
  ☆40Updated last year
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆35Updated 8 months ago
• Jianwei-Zhang / DEGAP
  Dynamic Elongation of a Genome Assembly Path
  ☆21Updated 11 months ago
• slimsuite / chromsyn
  Chromosome-level synteny plotting using orthologous regions
  ☆29Updated 7 months ago
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆25Updated 3 years ago
• Adamtaranto / TRF2GFF
  Convert Tandem Repeat Finder dat file output into gff3 format
  ☆27Updated 3 months ago
• ShuaiNIEgithub / Centromics
  Centromics: visualing centromeres with multiple omics data
  ☆18Updated last year
• rpianezza / GenomeDelta
  Detecting transposable element invasions without repeat library. Detects also horizontal transfer events and endogenized viruses. All you…
  ☆16Updated 4 months ago
• baozg / phased-assembly-check
  ☆29Updated 3 months ago
• heche-psb / wgd
  wgd v2: a suite of tools to uncover and date ancient polyploidy and whole-genome duplication
  ☆33Updated 2 months ago
• SwiftSeal / resistify
  Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…
  ☆31Updated this week
• linyuiz / zgtools
  zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.
  ☆29Updated last week
• xjtu-omics / HiCAT
  HiCAT new project
  ☆27Updated last year
• CAFS-bioinformatics / LR_Gapcloser
  use long sequenced reads to close gaps in assemblies
  ☆37Updated 6 years ago
• zhangrengang / SOI
  Robust identification of orthologous synteny with the Orthology Index
  ☆14Updated this week
• kavonrtep / SeqGrapheR
  ☆9Updated 4 years ago
• Chenglin20170390 / Haplotype-diversity
  This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…
  ☆28Updated 2 months ago
• Argonum-Clever2 / mike
  ☆29Updated last month
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆36Updated 2 years ago
• yhw320 / PanSyn
  ☆20Updated last year
• bcgsc / ntSynt-viz
  Multi-genome synteny block visualization tool
  ☆33Updated 2 months ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆40Updated last week
• chenym1 / genetribe
  A tool for performing collinearity-incorporating homology inference
  ☆29Updated last year
• JanaSperschneider / FindTelomeres
  A python script for finding telomeric repeats (TTAGGG/CCCTAA) in FASTA files
  ☆33Updated 2 years ago