yanyew / SynGAP
☆31Updated 3 months ago
Alternatives and similar repositories for SynGAP:
Users that are interested in SynGAP are comparing it to the libraries listed below
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆29Updated 2 months ago
- ☆27Updated last year
- ☆27Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- Plant genome assembly and annotation pipeline using snakemake☆40Updated last year
- ☆20Updated 6 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- ☆17Updated last year
- ☆28Updated 6 months ago
- Resistify is a program which rapidly identifies and classifies plant resistance genes from protein sequences. It is designed to be lightw…☆29Updated this week
- ☆29Updated 2 months ago
- ☆39Updated last year
- A tool for quick and accurate calculation of syntenic diversity.☆34Updated last month
- This is a method to find telomeres and centromeres in plants.☆38Updated last year
- Centromics: visualing centromeres with multiple omics data☆17Updated last year
- Chromosome-level synteny plotting using orthologous regions☆29Updated 5 months ago
- Robust identification of orthologous Synteny with the Orthology Index☆13Updated this week
- Python scripts to run tandem repeat finder program (Benson, 1999) and parse the results☆12Updated 5 years ago
- This repository contains relevant code and explanation for ”Leveraging a phased pangenome to design ideal haplotypes for hybrid potato br…☆27Updated last month
- Genome Annotation Pipeline☆35Updated 6 months ago
- Dinoflagellate Annotation Workflow☆14Updated 2 years ago
- ☆39Updated 2 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆33Updated 3 months ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated last year
- zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.☆27Updated last month
- A shiny application to visualize MCscan result☆35Updated 2 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆16Updated last year
- HiCAT new project☆27Updated last year
- Dynamic Elongation of a Genome Assembly Path☆21Updated 9 months ago