nanoporetech / ont-assembly-polishLinks
ONT assembly and Illumina polishing pipeline
☆89Updated 5 years ago
Alternatives and similar repositories for ont-assembly-polish
Users that are interested in ont-assembly-polish are comparing it to the libraries listed below
Sorting:
- Long-read mock community experiments☆104Updated 4 years ago
- Assembly statistic visualisation☆92Updated 2 years ago
- ☆81Updated 5 years ago
- A fast whole-genome aligner based on de Bruijn graphs☆156Updated 6 months ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆80Updated 5 years ago
- Analysis components from Oxford Nanopore Research☆96Updated last year
- 🌈Scaffold genome sequence assemblies using linked or long read sequencing data☆94Updated last year
- "Reads to report" for public health and clinical microbiology☆142Updated last month
- Flip-flop basecaller for Oxford Nanopore reads☆99Updated 3 years ago
- SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension☆47Updated 4 years ago
- Research release basecalling models and configurations☆117Updated 7 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Synteny Imager☆65Updated 3 weeks ago
- A tool for Racon polishing of miniasm assemblies☆78Updated 4 months ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Updated 6 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆88Updated 7 years ago
- A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), wit…☆91Updated 2 years ago
- MITObim - mitochondrial baiting and iterative mapping☆113Updated 5 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆88Updated last year
- Chromosome-level scaffolding using multiple references☆164Updated last year
- DDBJ Fast Annotation and Submission Tool☆83Updated 4 months ago
- Foreign Contamination Screening caller scripts and documentation☆155Updated 9 months ago
- A list of software for pangenomics☆165Updated 3 weeks ago
- Interactive quality assessment of genome assemblies☆116Updated 3 weeks ago
- ☆144Updated 2 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆54Updated last year
- Read Until client library for Nanopore Sequencing☆107Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆68Updated 4 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year