Tools and software library developed by the ONT Applications group
☆64Jan 22, 2021Updated 5 years ago
Alternatives and similar repositories for wub
Users that are interested in wub are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago
- Fast5 API provided by ONT Research☆21Mar 17, 2022Updated 4 years ago
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago
- Analysis components from Oxford Nanopore Research☆97Sep 4, 2024Updated last year
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆234May 4, 2023Updated 2 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Oct 11, 2018Updated 7 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Dec 20, 2018Updated 7 years ago
- Quality control for MinION sequencing data☆217Mar 17, 2026Updated last week
- Flip-flop basecaller for Oxford Nanopore reads☆99Jan 13, 2022Updated 4 years ago
- Animated GIF of flow cell performance from sequencing summary file.☆13Feb 20, 2018Updated 8 years ago
- ☆84Mar 3, 2025Updated last year
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 5 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Jan 26, 2022Updated 4 years ago
- Nanopore desc☆18Aug 22, 2016Updated 9 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Jun 27, 2022Updated 3 years ago
- ☆82Feb 22, 2022Updated 4 years ago
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆94Jan 13, 2022Updated 4 years ago
- Bioinformatics scripts produced over the course of my work. Now maintained on GitLab.☆69Sep 7, 2019Updated 6 years ago
- goleft is a collection of bioinformatics tools distributed under MIT license in a single static binary☆225Sep 18, 2025Updated 6 months ago
- defusion☆14Aug 24, 2021Updated 4 years ago
- A simple tool for extracting reads from Oxford Nanopore fast5 files☆26Sep 4, 2017Updated 8 years ago
- adapter trimmer for Oxford Nanopore reads☆385May 8, 2024Updated last year
- Pipeline for testing shifts in poly(A) tail lengths estimated by nanopolish☆10May 5, 2020Updated 5 years ago
- Software for Nanopore Analysis☆10Mar 14, 2018Updated 8 years ago
- HMM-HDP models for MinION signal alignments☆46Apr 10, 2017Updated 8 years ago
- reference-based long read assemblies of bacterial genomes☆51Aug 9, 2021Updated 4 years ago
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Mar 4, 2019Updated 7 years ago
- Python bindings to minimap2☆16Sep 18, 2017Updated 8 years ago
- hybrid assembly pipeline for bacterial genomes☆634Jul 25, 2024Updated last year
- Signal-level algorithms for MinION data☆594Aug 5, 2023Updated 2 years ago
- Graph-based mapping of long sequences, noisy or HiFi.☆55Oct 5, 2020Updated 5 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Sep 18, 2025Updated 6 months ago
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 6 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated last year
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63May 18, 2020Updated 5 years ago
- ☆17Apr 1, 2018Updated 7 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Oct 14, 2016Updated 9 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆182Jul 30, 2019Updated 6 years ago
- DNA assembler developed on FER (Croatia), RBI (Croatia) and GIS (Singapore)☆18Jan 18, 2016Updated 10 years ago