tszalay / poreseq
Error correction and variant calling algorithm for nanopore sequencing
☆26Updated 8 years ago
Alternatives and similar repositories for poreseq:
Users that are interested in poreseq are comparing it to the libraries listed below
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- Scripts for implementing read until and other examples.☆31Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- ☆26Updated 5 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Transcript assembly and quantification for RNA-Seq☆8Updated 5 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- This is an unsupported fork of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappea…☆21Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Code for phasing SVs with SNPs☆52Updated 4 years ago
- Tool for demultiplexing Nanopore barcode sequence data☆20Updated 3 years ago
- ☆29Updated 4 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- processing 10x genomics reads☆24Updated 5 years ago
- a simple C++ library for parsing and manipulating VCF files, + many command-line utilities☆20Updated 7 years ago
- An easy way to run BioNano genomic analysis☆27Updated 3 years ago
- Linked-Read Alignment Tool☆27Updated 5 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated 11 months ago
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago