tszalay / poreseqLinks
Error correction and variant calling algorithm for nanopore sequencing
☆26Updated 9 years ago
Alternatives and similar repositories for poreseq
Users that are interested in poreseq are comparing it to the libraries listed below
Sorting:
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- The CHM1-NA12878 benchmark for single-sample SNP/INDEL calling from WGS Illumina data☆30Updated 7 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Prioritize structural variants based on CADD scores☆29Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- a pileup library that embraces the huge☆43Updated 4 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆48Updated 4 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- 10x Genomics Reads Simulator☆45Updated last year
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- ☆30Updated 3 years ago
- Linked-Read Alignment Tool☆27Updated 6 years ago
- Tool for demultiplexing Nanopore barcode sequence data☆22Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆47Updated 6 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Updated 10 years ago