mdcao / npScarf
☆26Updated 5 years ago
Alternatives and similar repositories for npScarf:
Users that are interested in npScarf are comparing it to the libraries listed below
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last year
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆40Updated 4 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated 11 months ago
- tools for assessing the accuracy of genome assemblies☆34Updated 10 months ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 6 years ago
- STAG: Species Tree from All Genes☆33Updated 6 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- Compute N50/NG50 and auN/auNG☆31Updated last year
- Genome-Genome circle synteny☆23Updated last year
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- A high performance tool to identify orthologs and paralogs across genomes.☆26Updated last year
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated 2 months ago
- ☆32Updated 4 years ago
- genomic alignment similarity search tool☆19Updated 8 months ago
- Quality control plotting for long reads☆10Updated 9 months ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆17Updated last year
- ☆36Updated 2 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- A tool for recovering synteny blocks from multiple alignment☆29Updated 3 years ago
- Improved Phased Assembler☆28Updated 2 years ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- ☆52Updated 3 years ago
- ☆26Updated 3 years ago
- Gmove is a gene prediction tool☆21Updated 4 months ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 3 years ago
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- Predict MLST directly from uncorrected long reads☆26Updated 2 years ago