mdcao / npScarfLinks
☆26Updated 6 years ago
Alternatives and similar repositories for npScarf
Users that are interested in npScarf are comparing it to the libraries listed below
Sorting:
- In-depth characterization and annotation of differences between two sets of DNA sequences☆63Updated 5 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 5 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 3 years ago
- ☆35Updated 5 years ago
- reference-based long read assemblies of bacterial genomes☆51Updated 4 years ago
- Compute N50/NG50 and auN/auNG☆33Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- A tool for evaluate long-read de novo assembly results☆48Updated last year
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated 2 months ago
- A high performance tool to identify orthologs and paralogs across genomes.☆27Updated 2 years ago
- ☆53Updated 4 years ago
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆64Updated 5 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Updated 6 years ago
- Remove lambda phage reads from a fastq file☆29Updated 3 years ago
- Visualize whole genome alignments as linear maps☆74Updated 3 weeks ago
- Genome assembly scaffolding using information from paired-end/mate-pair libraries, long reads, and synteny to closely related species.☆24Updated 7 years ago
- ☆45Updated 9 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆25Updated 5 years ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- STAG: Species Tree from All Genes☆35Updated 7 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Updated 2 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- A tool for recovering synteny blocks from multiple alignment☆32Updated 4 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 9 months ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆69Updated 2 months ago
- finshingTool☆54Updated 9 years ago
- ☆68Updated last week