nanoporetech / pomoxisLinks
Analysis components from Oxford Nanopore Research
☆96Updated last year
Alternatives and similar repositories for pomoxis
Users that are interested in pomoxis are comparing it to the libraries listed below
Sorting:
- SquiggleKit: A toolkit for manipulating nanopore signal data☆128Updated last year
- A tool for Racon polishing of miniasm assemblies☆78Updated 2 months ago
- Structural Variant Identification Method using Genome Assemblies☆127Updated 3 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 2 months ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- Research release basecalling models and configurations☆116Updated 5 months ago
- Long read aligner☆115Updated 2 years ago
- Long-read mock community experiments☆104Updated 4 years ago
- ☆79Updated 5 years ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- Nanopore data assembler☆161Updated 3 years ago
- Pipeline to convert a haploid assembly into diploid☆106Updated 9 months ago
- Read Until client library for Nanopore Sequencing☆106Updated last year
- Yet another k-mer analyzer☆151Updated last month
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆150Updated 2 weeks ago
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated last month
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆81Updated 4 years ago
- An accurate and ultra-fast hybrid genome assembler☆86Updated last year
- A fast whole-genome aligner based on de Bruijn graphs☆153Updated 4 months ago
- Flip-flop basecaller for Oxford Nanopore reads☆100Updated 3 years ago
- Long-read metagenomic analysis☆106Updated 2 years ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Updated 6 years ago
- Structural Variant Identification Method using Long Reads☆178Updated 4 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Updated 3 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆143Updated last year
- Get assembly statistics from FASTA and FASTQ files☆124Updated 2 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆114Updated 5 months ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year