Analysis components from Oxford Nanopore Research
☆97Apr 9, 2026Updated 3 weeks ago
Alternatives and similar repositories for pomoxis
Users that are interested in pomoxis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis pipelines from Oxford Nanopore Technologies' Research Division☆48Oct 16, 2020Updated 5 years ago
- Sequence correction provided by ONT Research☆508Apr 8, 2026Updated 3 weeks ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆233May 4, 2023Updated 3 years ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆73Oct 28, 2020Updated 5 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Flip-flop basecaller for Oxford Nanopore reads☆99Jan 13, 2022Updated 4 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆86Jul 4, 2022Updated 3 years ago
- adapter trimmer for Oxford Nanopore reads☆387May 8, 2024Updated last year
- Tools and software library developed by the ONT Applications group☆64Jan 22, 2021Updated 5 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆285Oct 18, 2024Updated last year
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago
- reference-based long read assemblies of bacterial genomes☆52Aug 9, 2021Updated 4 years ago
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆94Jan 13, 2022Updated 4 years ago
- Structural variation caller using third generation sequencing☆651Apr 2, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies☆66Feb 23, 2020Updated 6 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆922Apr 3, 2026Updated last month
- Interactive visualization of assembly graphs☆83Apr 2, 2022Updated 4 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads☆239Dec 29, 2023Updated 2 years ago
- An accurate and ultra-fast hybrid genome assembler☆87Apr 10, 2024Updated 2 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆115Oct 25, 2021Updated 4 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Jan 26, 2022Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆35Dec 11, 2019Updated 6 years ago
- Signal-level algorithms for MinION data☆596Aug 5, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation☆23Mar 4, 2019Updated 7 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆309Mar 18, 2024Updated 2 years ago
- Plotting scripts for long read sequencing data☆549Mar 17, 2026Updated last month
- Nanopore sequence read simulator☆298Mar 12, 2026Updated last month
- Chromosome-level scaffolding using multiple references☆166Sep 8, 2024Updated last year
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- Pipeline to convert a haploid assembly into diploid☆111Jan 23, 2025Updated last year
- MarginPolish: Graph based assembly polishing☆47Nov 24, 2020Updated 5 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆353Jul 19, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pilon is an automated genome assembly improvement and variant detection tool☆380Apr 10, 2022Updated 4 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆669Dec 3, 2022Updated 3 years ago
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 6 years ago
- The repository contains the source code of the NanoForms server (Czmil et al. NanoForms: an integrated server for processing, analysis an…☆11Feb 22, 2023Updated 3 years ago
- SV caller for nanopore data☆92Jun 7, 2020Updated 5 years ago
- Comparison of multiple long read datasets☆172Dec 2, 2025Updated 5 months ago
- Swipe your Structural Variants called on long (ONT/PacBio) reads with short exact (Illumina) reads.☆32Sep 19, 2022Updated 3 years ago