nanoporetech / pomoxisLinks
Analysis components from Oxford Nanopore Research
☆94Updated 11 months ago
Alternatives and similar repositories for pomoxis
Users that are interested in pomoxis are comparing it to the libraries listed below
Sorting:
- A tool for Racon polishing of miniasm assemblies☆77Updated 2 months ago
- Structural Variant Identification Method using Genome Assemblies☆122Updated 2 years ago
- Long-read mock community experiments☆106Updated 3 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆126Updated last year
- Read Until client library for Nanopore Sequencing☆104Updated 11 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆173Updated 4 years ago
- ☆78Updated 4 years ago
- Research release basecalling models and configurations☆115Updated 3 months ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆103Updated 11 months ago
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- Nanopore data assembler☆160Updated 3 years ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆143Updated 3 weeks ago
- A fast whole-genome aligner based on de Bruijn graphs☆153Updated last month
- Structural Variant Identification Method using Long Reads☆173Updated 4 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆173Updated 4 years ago
- Create statistic summary of an Oxford Nanopore read dataset☆118Updated 2 years ago
- Pipeline to convert a haploid assembly into diploid☆102Updated 7 months ago
- Chromosome-level scaffolding using multiple references☆161Updated 11 months ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆188Updated last year
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆81Updated 4 years ago
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆112Updated 2 months ago
- Get assembly statistics from FASTA and FASTQ files☆122Updated 2 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆140Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆172Updated last year
- ☆155Updated last week
- Assemblytics is a bioinformatics tool to detect and analyze structural variants from a genome assembly by comparing it to a reference gen…☆145Updated last month
- A post sequencing QC tool for Oxford Nanopore sequencers☆100Updated last month
- ☆137Updated 3 months ago