A comparison of different Oxford Nanopore basecallers
☆316Aug 5, 2019Updated 7 years ago
Alternatives and similar repositories for Basecalling-comparison
Users that are interested in Basecalling-comparison are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Flip-flop basecaller for Oxford Nanopore reads☆97Jan 13, 2022Updated 4 years ago
- Signal-level algorithms for MinION data☆603Aug 5, 2023Updated 3 years ago
- A basecaller for Oxford Nanopore Technologies' sequencers☆121Jul 6, 2023Updated 3 years ago
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆60Aug 6, 2019Updated 7 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆232May 4, 2023Updated 3 years ago
- Training models for basecalling Oxford Nanopore reads☆117Jan 13, 2022Updated 4 years ago
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆94Jan 13, 2022Updated 4 years ago
- a toolkit for working with Oxford nanopore data☆243Feb 6, 2023Updated 3 years ago
- adapter trimmer for Oxford Nanopore reads☆389May 8, 2024Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆303May 9, 2024Updated 2 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Dec 20, 2018Updated 7 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆124Jan 18, 2021Updated 5 years ago
- Data and analysis for NA12878 genome on nanopore☆413Nov 22, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Quality control for MinION sequencing data☆220Mar 17, 2026Updated 6 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆182Jul 30, 2019Updated 7 years ago
- An Oxford Nanopore Basecaller☆71Sep 4, 2021Updated 5 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Mar 15, 2021Updated 5 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- ☆50Nov 7, 2024Updated last year
- hybrid assembly pipeline for bacterial genomes☆653Jul 29, 2026Updated 2 months ago
- qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.☆79Dec 15, 2020Updated 5 years ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆435Feb 20, 2026Updated 7 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Dec 13, 2023Updated 2 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆533Sep 27, 2023Updated 3 years ago
- Neural-network consensus polishing and variant calling for Oxford Nanopore sequencing data☆529May 20, 2026Updated 4 months ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Jun 27, 2022Updated 4 years ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- SV caller for nanopore data☆92Jun 7, 2020Updated 6 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,254May 19, 2026Updated 4 months ago
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆678Jul 7, 2026Updated 3 months ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Nov 25, 2017Updated 8 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- SquiggleKit: A toolkit for manipulating nanopore signal data☆130Feb 16, 2024Updated 2 years ago
- De novo assembler for single molecule sequencing reads using repeat graphs☆952Apr 3, 2026Updated 6 months ago
- Long-read mock community experiments☆103Oct 8, 2021Updated 5 years ago
- HMM-HDP models for MinION signal alignments☆47Apr 10, 2017Updated 9 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆284Oct 18, 2024Updated last year
- Structural variation caller using third generation sequencing☆684Sep 10, 2026Updated 3 weeks ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆205May 4, 2023Updated 3 years ago