rrwick / Basecalling-comparisonLinks
A comparison of different Oxford Nanopore basecallers
☆316Updated 5 years ago
Alternatives and similar repositories for Basecalling-comparison
Users that are interested in Basecalling-comparison are comparing it to the libraries listed below
Sorting:
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆283Updated last year
- Pilon is an automated genome assembly improvement and variant detection tool☆367Updated 3 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆234Updated 4 years ago
- quality filtering tool for long reads☆346Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆324Updated last year
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆281Updated 8 months ago
- adapter trimmer for Oxford Nanopore reads☆365Updated last year
- Fast and accurate de novo assembler for long reads☆388Updated last year
- TransDecoder source☆291Updated 8 months ago
- SortMeRNA: next-generation sequence filtering and alignment tool☆271Updated 5 months ago
- Sequence correction provided by ONT Research☆463Updated last month
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆262Updated last month
- Extensive de-novo TE Annotator☆390Updated this week
- Structural variation caller using third generation sequencing☆596Updated 2 weeks ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆303Updated last year
- Eukaryotic Genome Annotation Pipeline☆355Updated last month
- Classifier for metagenomic sequences☆260Updated this week
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 4 months ago
- Genome Assembly and Annotation Service code☆212Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆343Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆308Updated 2 months ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆233Updated 2 years ago
- Tools for fast and flexible genome assembly scaffolding and improvement☆511Updated last year
- Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…☆310Updated 4 months ago
- the pangenome graph builder☆437Updated 2 weeks ago
- Data and analysis for NA12878 genome on nanopore☆392Updated 2 years ago
- Genome assembly evaluation tool☆441Updated 7 months ago
- Next generation sequencing reads de novo assembler.☆233Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆411Updated 5 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆284Updated last month