NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore technologies to produce NaS (Nanopore Synthetic-long) reads of up to 60 kb that aligned with no error to the reference genome and spanned repetitive regions.
☆15Mar 28, 2017Updated 9 years ago
Alternatives and similar repositories for NaS
Users that are interested in NaS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Mar 5, 2017Updated 9 years ago
- Experimental pipeline for correcting nanopore reads☆39May 23, 2017Updated 8 years ago
- ☆18Nov 16, 2015Updated 10 years ago
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Error correction for Oxford Nanopore data☆47May 29, 2021Updated 4 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- Protein Alignment and Detection Interface☆60Apr 1, 2024Updated 2 years ago
- Parallel implementation of the LAST aligner☆18Nov 27, 2016Updated 9 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Dec 13, 2023Updated 2 years ago
- ☆12Feb 19, 2017Updated 9 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Tool to look for contaminants, with a kmer database.☆15Jun 6, 2014Updated 11 years ago
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 9 years ago
- HybridCheck, an R package for quickly scripting scans of sequence data for recombination regions.☆15Jan 28, 2022Updated 4 years ago
- ☆10Jul 23, 2020Updated 5 years ago
- Various scripts and recipes for working with nanopore data☆35Apr 17, 2016Updated 10 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49May 25, 2021Updated 4 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 3 years ago
- ☆12Sep 11, 2025Updated 7 months ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated 2 weeks ago
- Analysis tool for Nanopore sequencing data☆34Apr 15, 2019Updated 7 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Mar 27, 2026Updated 3 weeks ago
- deBGR: An Efficient and Near-Exact Representation of the Weighted de Bruijn Graph☆31Jan 19, 2021Updated 5 years ago
- Software for Nanopore Analysis☆10Mar 14, 2018Updated 8 years ago
- Manipulate FASTA files☆29Aug 26, 2014Updated 11 years ago
- Given a reference, PhaME extracts SNPs from complete genomes, draft genomes and/or reads. Uses SNP multiple sequence alignment to constr…☆33Nov 28, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- PacBio hybrid error correction through iterative short read consensus