institut-de-genomique / NaSLinks
NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore technologies to produce NaS (Nanopore Synthetic-long) reads of up to 60 kb that aligned with no error to the reference genome and spanned repetitive regions.
☆15Updated 8 years ago
Alternatives and similar repositories for NaS
Users that are interested in NaS are comparing it to the libraries listed below
Sorting:
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆15Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 9 months ago
- Improved Phased Assembler☆28Updated 3 years ago
- Haplotype-aware genome assembly toolkit☆29Updated 5 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- genomic alignment similarity search tool☆18Updated 3 months ago
- Tool for visualising assemblies.☆17Updated 9 years ago
- ☆26Updated 6 years ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- scripts to parse IrysView output☆11Updated 10 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆45Updated 2 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago
- ☆26Updated 5 years ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆35Updated 4 months ago
- Visualize whole genome alignments as linear maps☆73Updated 3 weeks ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated 2 months ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆45Updated last year