institut-de-genomique / NaSLinks
NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore technologies to produce NaS (Nanopore Synthetic-long) reads of up to 60 kb that aligned with no error to the reference genome and spanned repetitive regions.
☆15Updated 8 years ago
Alternatives and similar repositories for NaS
Users that are interested in NaS are comparing it to the libraries listed below
Sorting:
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆15Updated 5 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- ☆26Updated 5 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago
- Tool for visualising assemblies.☆17Updated 10 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago
- genomic alignment similarity search tool☆18Updated 4 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 5 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last week
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Fast and accurate tool for estimating genomic distances between genome-skims☆44Updated last year
- GATB Minia assembly pipeline☆30Updated 2 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Toolkit for preparing genomes for submission to NCBI☆29Updated 4 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆47Updated 3 years ago
- reference-based long read assemblies of bacterial genomes☆50Updated 4 years ago
- ☆25Updated 6 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- scripts to parse IrysView output☆11Updated 10 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- Conditional Reciprocal Best Blast☆42Updated 8 years ago
- Code to create a PRG from a Multiple Sequence Alignment file☆25Updated last week