institut-de-genomique / NaS
NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore technologies to produce NaS (Nanopore Synthetic-long) reads of up to 60 kb that aligned with no error to the reference genome and spanned repetitive regions.
☆15Updated 8 years ago
Alternatives and similar repositories for NaS:
Users that are interested in NaS are comparing it to the libraries listed below
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- ☆26Updated 5 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆13Updated 4 years ago
- Improved Phased Assembler☆28Updated 3 years ago
- genomic alignment similarity search tool☆18Updated 10 months ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 6 years ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- ☆26Updated 6 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆45Updated 2 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆60Updated 4 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Tool for visualising assemblies.☆17Updated 9 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies☆24Updated 4 years ago
- Visualising discordant reads☆15Updated 9 years ago
- ☆52Updated 3 years ago
- de Bruijn Workflow using Integral information of Short pair End reads☆13Updated 7 months ago
- scripts to parse IrysView output☆11Updated 9 years ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆37Updated last month
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- Implementation of ToL genome assembly workflows☆20Updated this week
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- ☆17Updated 7 years ago
- use paired-end transcriptome reads to scaffold genomes☆11Updated 5 years ago