NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore technologies to produce NaS (Nanopore Synthetic-long) reads of up to 60 kb that aligned with no error to the reference genome and spanned repetitive regions.
☆15Mar 28, 2017Updated 9 years ago
Alternatives and similar repositories for NaS
Users that are interested in NaS are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆18Mar 5, 2017Updated 9 years ago
- Experimental pipeline for correcting nanopore reads☆39May 23, 2017Updated 9 years ago
- Manipulate FASTA files☆29Aug 26, 2014Updated 12 years ago
- Error correction for Oxford Nanopore data☆47May 29, 2021Updated 5 years ago
- ☆18Nov 16, 2015Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 9 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 11 years ago
- Nextera Long Mate Pair analysis and processing tool☆18Mar 26, 2020Updated 6 years ago
- Protein Alignment and Detection Interface☆61Apr 1, 2024Updated 2 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 10 years ago
- Annotate your metagenome assemblies☆11Jul 19, 2018Updated 8 years ago
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- 🚝RAILS and 👞🔨Cobbler: Assembly Improvement by Long Sequence Scaffolding/Gap-filling☆27Apr 1, 2026Updated 7 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Various scripts and recipes for working with nanopore data☆36Apr 17, 2016Updated 10 years ago
- ☆25May 21, 2021Updated 5 years ago
- Parallel implementation of the LAST aligner☆18Nov 27, 2016Updated 9 years ago
- Abbreviate strings to short, unique identifiers☆24May 10, 2022Updated 4 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Dec 13, 2023Updated 2 years ago
- Simple and quick FastQ and FastA tool for file reading and conversion☆17Jul 11, 2014Updated 12 years ago
- Tool to look for contaminants, with a kmer database.☆15Jun 6, 2014Updated 12 years ago
- ☆13Feb 19, 2017Updated 9 years ago
- HybridCheck, an R package for quickly scripting scans of sequence data for recombination regions.☆15Jan 28, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- A tool to analyze synteny at the protein level.☆14Mar 28, 2018Updated 8 years ago
- Biopsy - the Bioinformatic Optimisation System☆16Nov 1, 2015Updated 11 years ago
- Tool (experimental) to compute layout from overlaps with spectral algorithm☆11Nov 28, 2017Updated 8 years ago
- Pipeline for Evaluating Prokaryotic References☆11Sep 16, 2016Updated 10 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49May 25, 2021Updated 5 years ago
- A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads☆68Nov 4, 2021Updated 5 years ago
- A universal genomic coordinate translator for comparative genomics☆12Jul 6, 2017Updated 9 years ago
- Graphical assessment of structrial variants using 10x genomics data☆10Feb 23, 2017Updated 9 years ago
- Nanopore read de-multiplexer☆13Mar 25, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆10Oct 10, 2020Updated 6 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆59Sep 11, 2025Updated last year
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- Helper Perl scripts and tree files associated with the EukProt database of genome-scale eukaryotic protein sequence data sets.☆14Nov 30, 2023Updated 2 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- Pipeline to annotate sequences at different taxonomic levels using NCBI's taxonomy☆19Jul 19, 2013Updated 13 years ago
- Analysis tool for Nanopore sequencing data☆34Apr 15, 2019Updated 7 years ago