alexiswl / poreduck
A comprehensive toolkit for running Oxford Nanopore's MinION
☆12Updated 6 years ago
Alternatives and similar repositories for poreduck:
Users that are interested in poreduck are comparing it to the libraries listed below
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Find Unique genomic Regions☆29Updated 3 weeks ago
- ☆19Updated 7 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 4 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Adapters for trimming☆30Updated 6 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆30Updated 7 months ago
- Read nanopore sequence reads in real-time☆14Updated 7 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆18Updated 3 years ago
- MapCaller – An efficient and versatile approach for short-read alignment and variant detection in high-throughput sequenced genomes☆30Updated 3 years ago
- The shiny app that accompanies the ngsReports R package☆14Updated 3 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 6 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated last year
- Combine reference and assembled transcriptomes for RNA-Seq analysis☆20Updated 4 years ago
- Software for Nanopore Analysis☆10Updated 6 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆13Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 8 years ago
- Fast in-silico normalization algorithm for NGS data☆22Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- ☆11Updated last year
- full taxonomer cython repository☆22Updated 5 years ago
- DETONATE: DE novo TranscriptOme rNa-seq Assembly with or without the Truth Evaluation☆11Updated 8 years ago
- This repository is deprecated, please use the link to the right.☆23Updated 6 years ago
- Identifying repeats in high-throughput sequencing data☆15Updated 9 months ago