nanoporetech / flappieLinks
Flip-flop basecaller for Oxford Nanopore reads
☆100Updated 3 years ago
Alternatives and similar repositories for flappie
Users that are interested in flappie are comparing it to the libraries listed below
Sorting:
- ONT assembly and Illumina polishing pipeline☆89Updated 4 years ago
- Long-read mock community experiments☆106Updated 3 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- Visualise and analyse nanopore (ONT) raw signals☆119Updated 2 weeks ago
- Research release basecalling models and configurations☆115Updated 2 months ago
- ☆78Updated 4 years ago
- Analysis components from Oxford Nanopore Research☆94Updated 11 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 3 months ago
- Assembly statistic visualisation☆90Updated last year
- SV caller for nanopore data☆91Updated 5 years ago
- A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies☆59Updated 6 years ago
- Toolkit for calling structural variants using short or long reads☆107Updated last week
- SquiggleKit: A toolkit for manipulating nanopore signal data☆125Updated last year
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 3 years ago
- Pipeline to convert a haploid assembly into diploid☆102Updated 6 months ago
- Tandem repeat genotyping and visualization from PacBio HiFi data☆122Updated last week
- Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.☆32Updated 4 months ago
- Long read aligner☆115Updated 2 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 2 years ago
- RNA modifications detection from Nanopore dRNA-Seq data☆86Updated 2 weeks ago
- Fast and accurate coordinate conversion between assemblies☆114Updated 4 months ago
- ☆116Updated 3 months ago
- ☆71Updated 5 years ago
- Phased assembly variant caller☆123Updated 8 months ago
- Same species annotation lift over pipeline.☆98Updated 2 years ago
- ☆49Updated 9 months ago
- Tools to annotate genomes using long read transcriptomics data☆46Updated 4 years ago
- Nanopore raw signal repeat detection pipeline☆45Updated 2 years ago
- LRSDAY: Long-read Sequencing Data Analysis for Yeasts☆31Updated last year