Alternatives and similar repositories for flappie

Users that are interested in flappie are comparing it to the libraries listed below

• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆115Updated 3 months ago
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆89Updated 4 years ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 5 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆82Updated 3 years ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago
• LooseLab / bulkvis
  ☆49Updated 9 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆120Updated last month
• xiaochuanle / MECAT2
  ☆71Updated 5 years ago
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆104Updated 11 months ago
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆115Updated 5 months ago
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆108Updated 3 weeks ago
• tleonardi / nanocompore
  RNA modifications detection from Nanopore dRNA-Seq data
  ☆86Updated last month
• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆106Updated 3 years ago
• twolinin / longphase
  ☆116Updated last week
• nanoporetech / qcat
  qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.
  ☆81Updated 4 years ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆125Updated 8 months ago
• SorenKarst / longread_umi
  ☆78Updated 4 years ago
• kishwarshafin / helen
  H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)
  ☆72Updated 4 years ago
• nanoporetech / pomoxis
  Analysis components from Oxford Nanopore Research
  ☆94Updated 11 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆102Updated 7 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 4 months ago
• lh3 / dipcall
  Reference-based variant calling pipeline for a pair of phased haplotype assemblies
  ☆103Updated 4 years ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆51Updated 2 years ago
• WGLab / NanoCaller
  Variant calling tool for long-read sequencing data
  ☆112Updated 5 months ago
• dnanexus-archive / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆103Updated 4 years ago
• giesselmann / STRique
  Nanopore raw signal repeat detection pipeline
  ☆45Updated 2 years ago
• eblerjana / pangenie
  Pangenome-based genome inference
  ☆139Updated last month
• lfaino / LoReAn
  Long Reads Annotation pipeline
  ☆72Updated 3 years ago
• Psy-Fer / SquiggleKit
  SquiggleKit: A toolkit for manipulating nanopore signal data
  ☆126Updated last year