Flip-flop basecaller for Oxford Nanopore reads
☆97Jan 13, 2022Updated 4 years ago
Alternatives and similar repositories for flappie
Users that are interested in flappie are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Training models for basecalling Oxford Nanopore reads☆116Jan 13, 2022Updated 4 years ago
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 7 years ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆232May 4, 2023Updated 3 years ago
- ☆49Nov 7, 2024Updated last year
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆205May 4, 2023Updated 3 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- a signal-level demultiplexer for Oxford Nanopore reads☆125Jan 18, 2021Updated 5 years ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆436Feb 20, 2026Updated 5 months ago
- Fast5 API provided by ONT Research☆21Mar 17, 2022Updated 4 years ago
- SquiggleKit: A toolkit for manipulating nanopore signal data☆129Feb 16, 2024Updated 2 years ago
- DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications☆104Mar 8, 2023Updated 3 years ago
- SV caller for nanopore data☆92Jun 7, 2020Updated 6 years ago
- A versatile sequenced read processor for nanopore direct RNA sequencing☆81May 24, 2020Updated 6 years ago
- Analysis components from Oxford Nanopore Research☆98Jul 1, 2026Updated last month
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆94Jan 13, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆288Oct 18, 2024Updated last year
- A basecaller for Oxford Nanopore Technologies' sequencers☆121Jul 6, 2023Updated 3 years ago
- Signal-level algorithms for MinION data☆600Aug 5, 2023Updated 3 years ago
- Sequence correction provided by ONT Research☆520May 20, 2026Updated 2 months ago
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆272Oct 13, 2022Updated 3 years ago
- Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing☆173Dec 26, 2023Updated 2 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆300May 9, 2024Updated 2 years ago
- A python program to call methylation (m6A in DNA) from nanopore signal data☆47Jun 24, 2021Updated 5 years ago
- Nanopore basecalling and consensus decoding☆46Jul 22, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- Oxford Nanopore HDF/Fast5 to CRAM conversion tool☆22Dec 30, 2019Updated 6 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Dec 20, 2018Updated 7 years ago
- RNA modifications detection from Nanopore dRNA-Seq data☆88Jun 20, 2026Updated last month
- Quality control for MinION sequencing data☆221Mar 17, 2026Updated 4 months ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆120Jun 4, 2023Updated 3 years ago
- Oxford Nanopore Technologies fast5 API software☆155Feb 27, 2024Updated 2 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Apr 8, 2021Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆310Mar 18, 2024Updated 2 years ago
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆166Mar 19, 2026Updated 4 months ago
- Long read / genome alignment software☆329Dec 16, 2025Updated 7 months ago
- Data and analysis for NA12878 genome on nanopore☆410Nov 22, 2022Updated 3 years ago
- Sloika is Oxford Nanopore Technologies' software for training neural network models for base calling☆27Aug 31, 2022Updated 3 years ago
- A tool for Racon polishing of miniasm assemblies☆82Jul 24, 2026Updated 2 weeks ago
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago