Alternatives and similar repositories for flappie

Users that are interested in flappie are comparing it to the libraries listed below

• mroosmalen / nanosv
  SV caller for nanopore data
  ☆92Updated 5 years ago
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆91Updated 3 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆115Updated 3 months ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆121Updated last week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆117Updated 5 months ago
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆89Updated 4 years ago
• nanoporetech / pomoxis
  Analysis components from Oxford Nanopore Research
  ☆95Updated last year
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆109Updated last week
• nanoporetech / qcat
  qcat is a Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files.
  ☆81Updated 4 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆82Updated 3 years ago
• EichlerLab / pav
  Phased assembly variant caller
  ☆125Updated 9 months ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆103Updated 7 months ago
• LooseLab / bulkvis
  ☆49Updated 10 months ago
• PacificBiosciences / trgt
  Tandem repeat genotyping and visualization from PacBio HiFi data
  ☆124Updated last month
• lbcb-sci / graphmap2
  GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…
  ☆68Updated 3 years ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆128Updated 2 weeks ago
• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆105Updated 3 years ago
• xiaochuanle / MECAT2
  ☆71Updated 5 years ago
• tleonardi / nanocompore
  RNA modifications detection from Nanopore dRNA-Seq data
  ☆86Updated last week
• MBoemo / DNAscent
  Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
  ☆32Updated last week
• epi2me-labs / modbam2bed
  ☆49Updated last year
• SorenKarst / longread_umi
  ☆79Updated 4 years ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆91Updated 4 months ago
• ChaissonLab / LRA
  Long read aligner
  ☆115Updated 2 years ago
• skovaka / uncalled4
  ☆76Updated 8 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆98Updated 2 years ago
• informationsea / transanno
  accurate LiftOver tool for new genome assemblies
  ☆134Updated last year
• dnanexus-archive / parliament2
  Runs a combination of tools to generate structural variant calls on whole-genome sequencing data
  ☆103Updated 4 years ago
• Psy-Fer / SquiggleKit
  SquiggleKit: A toolkit for manipulating nanopore signal data
  ☆127Updated last year
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆85Updated 9 months ago