Alternatives and similar repositories for flappie:

Users that are interested in flappie are comparing it to the libraries listed below

• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆91Updated 4 years ago
• nanoporetech / pychopper
  A tool to identify, orient, trim and rescue full length cDNA reads
  ☆81Updated 2 years ago
• nanoporetech / rerio
  Research release basecalling models and configurations
  ☆110Updated 10 months ago
• giesselmann / STRique
  Nanopore raw signal repeat detection pipeline
  ☆45Updated 2 years ago
• KolmogorovLab / hapdup
  Pipeline to convert a haploid assembly into diploid
  ☆100Updated 3 months ago
• rrwick / August-2019-consensus-accuracy-update
  A short analysis of Oxford Nanopore consensus accuracy for bacterial genome assemblies
  ☆59Updated 5 years ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆115Updated 2 months ago
• lfaino / LoReAn
  Long Reads Annotation pipeline
  ☆72Updated 3 years ago
• LomanLab / mockcommunity
  Long-read mock community experiments
  ☆105Updated 3 years ago
• PacificBiosciences / barcoding
  Lima - Demultiplex Barcoded PacBio Samples
  ☆66Updated 2 months ago
• wurmlab / flo
  Same species annotation lift over pipeline.
  ☆97Updated last year
• LooseLab / bulkvis
  ☆48Updated 5 months ago
• nanoporetech / pinfish
  Tools to annotate genomes using long read transcriptomics data
  ☆45Updated 4 years ago
• mroosmalen / nanosv
  SV caller for nanopore data
  ☆91Updated 4 years ago
• nanoporetech / duplex-tools
  Splitting of sequence reads by internal adapter sequence search
  ☆50Updated last year
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆89Updated last week
• giesselmann / nanopype
  Snakemake pipelines for nanopore sequencing data archiving and processing
  ☆90Updated 3 years ago
• MBoemo / DNAscent
  Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
  ☆31Updated last month
• yjx1217 / LRSDAY
  LRSDAY: Long-read Sequencing Data Analysis for Yeasts
  ☆31Updated last year
• paoloshasta / shasta
  De novo assembly from Oxford Nanopore reads.
  ☆83Updated last week
• JustinChu / JupiterPlot
  A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.
  ☆79Updated 5 months ago
• xiaochuanle / MECAT2
  ☆71Updated 4 years ago
• nanoporetech / kmer_models
  Predictive kmer models for development use
  ☆55Updated last year
• SorenKarst / longread_umi
  ☆77Updated 4 years ago
• epi2me-labs / wf-basecalling
  ☆39Updated last week
• nanoporetech / read_until_api
  Read Until client library for Nanopore Sequencing
  ☆104Updated 7 months ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆90Updated last month
• kjenike / panagram
  ☆61Updated last month
• genotoul-bioinfo / dgenies
  Dotplot large Genomes in an Interactive, Efficient and Simple way
  ☆103Updated 3 months ago
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆111Updated this week