roblanf / minion_qc
Quality control for MinION sequencing data
☆215Updated 2 years ago
Alternatives and similar repositories for minion_qc:
Users that are interested in minion_qc are comparing it to the libraries listed below
- Filtering and trimming of long read sequencing data☆201Updated 2 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆197Updated last year
- Fast and accurately polish the genome generated by long reads.☆219Updated 2 months ago
- A tool to circularize genome assemblies☆239Updated 11 months ago
- An overview of all nanopack tools☆236Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆300Updated last month
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆136Updated 3 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆276Updated 5 months ago
- ☆178Updated last month
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆159Updated last year
- Genome Assembly and Annotation Service code☆209Updated last year
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 3 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆205Updated 2 years ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆170Updated 4 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆246Updated last week
- A tool for generating consensus long-read assemblies for bacterial genomes☆317Updated 9 months ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆208Updated 3 weeks ago
- ☆199Updated last month
- quality filtering tool for long reads☆323Updated last year
- a signal-level demultiplexer for Oxford Nanopore reads☆125Updated 4 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆267Updated last month
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆297Updated last year
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆183Updated 10 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆197Updated 3 weeks ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆144Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆197Updated 7 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆354Updated 2 years ago
- Nanopore data assembler☆146Updated 2 years ago
- Jasmine: SV Merging Across Samples☆208Updated 3 months ago