Alternatives and similar repositories for minion_qc:

Users that are interested in minion_qc are comparing it to the libraries listed below

• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆292Updated last month
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆194Updated last year
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆215Updated last week
• philres / ngmlr
  NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…
  ☆295Updated 10 months ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆313Updated 7 months ago
• yfukasawa / LongQC
  LongQC is a tool for the data quality control of the PacBio and ONT long reads.
  ☆155Updated last year
• wdecoster / nanofilt
  Filtering and trimming of long read sequencing data
  ☆197Updated 2 years ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆130Updated 3 years ago
• a-slide / pycoQC
  pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…
  ☆273Updated 3 months ago
• jtlovell / GENESPACE
  ☆196Updated 5 months ago
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆308Updated last year
• mahulchak / quickmerge
  A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
  ☆202Updated 2 years ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆233Updated 9 months ago
• ndierckx / NOVOPlasty
  NOVOPlasty - The organelle assembler and heteroplasmy caller
  ☆182Updated 11 months ago
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆170Updated 3 years ago
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 3 years ago
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆206Updated last year
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆345Updated 2 years ago
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆200Updated 2 months ago
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆256Updated 6 months ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆239Updated 2 months ago
• rrwick / Deepbinner
  a signal-level demultiplexer for Oxford Nanopore reads
  ☆124Updated 4 years ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆231Updated last year
• tseemann / mlst
  Scan contig files against PubMLST typing schemes
  ☆206Updated 2 years ago
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆151Updated 2 months ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆215Updated 3 years ago
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆195Updated 4 months ago
• wdecoster / nanopack
  An overview of all nanopack tools
  ☆226Updated last year
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆107Updated last year
• tseemann / any2fasta
  Convert various sequence formats to FASTA
  ☆127Updated 2 years ago