roblanf / minion_qcLinks
Quality control for MinION sequencing data
☆216Updated 2 years ago
Alternatives and similar repositories for minion_qc
Users that are interested in minion_qc are comparing it to the libraries listed below
Sorting:
- Filtering and trimming of long read sequencing data☆209Updated 2 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated 11 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated last month
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆204Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆320Updated 5 months ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆206Updated 2 years ago
- Generate an interactive dot plot from mummer or minimap alignments☆209Updated last year
- ☆216Updated 7 months ago
- A tool to circularize genome assemblies☆247Updated last year
- Genome Assembly and Annotation Service code☆214Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆207Updated 2 months ago
- Classifier for metagenomic sequences☆265Updated 2 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- Fast and accurately polish the genome generated by long reads.☆234Updated 8 months ago
- ☆210Updated last month
- An overview of all nanopack tools☆268Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆332Updated last week
- ☆260Updated 2 months ago
- RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag☆172Updated 4 years ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆172Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆276Updated 7 months ago
- snipit: summarise snps relative to your reference sequence☆163Updated 4 months ago
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆234Updated 2 years ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆191Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆306Updated last year
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆239Updated 4 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- Bacterial ribosomal RNA predictor☆254Updated 2 years ago
- quality filtering tool for long reads☆365Updated last month
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆272Updated this week