EvdH0 / poreFUME
Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing
☆12Updated 8 years ago
Alternatives and similar repositories for poreFUME:
Users that are interested in poreFUME are comparing it to the libraries listed below
- ☆19Updated 8 years ago
- Quantifying the significance of genetic variation using probabilistic profile-based methods.☆19Updated 3 years ago
- Genomic Assemblies Merger for NGS☆26Updated last year
- Bioinformatics pipeline for nanopore sequencing data☆10Updated 6 years ago
- Assembly and scaffolding of bacterial genomes in real time using MinION-sequencing☆9Updated 7 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆25Updated 2 years ago
- Northern Arizona SNP Pipeline☆19Updated 4 months ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 3 months ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 3 years ago
- Light version blobtools package - NO LONGER MAINTAINED! DO NOT USE!☆8Updated 9 years ago
- Paint genomes with taxa-specific k-mer probabilities☆15Updated 2 years ago
- Paint genomes with taxa-specific k-mer probabilities☆8Updated 7 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆14Updated 9 months ago
- blast, shmlast☆22Updated 4 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Indel-aware consensus for aligned BAM☆21Updated 3 months ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- VESPA: Very large-scale Evolutionary and Selective Pressure Analyses☆14Updated 3 years ago
- Software for Nanopore Analysis☆10Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 9 months ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 6 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- Calculate genome wide average nucleotide identity (gwANI) for a multiFASTA alignment☆16Updated 6 years ago
- Additional tools for analyzing Oxford Nanopore minION data☆17Updated 9 years ago
- Scaffolding with assembly likelihood optimization☆21Updated 4 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- high-throughput primer design and graphical visualization☆9Updated 7 years ago
- A set of scripts to help automate the construction of data sets for multi-gene phylogenetic analyses.☆13Updated 6 years ago