TheJacksonLaboratory / PickyLinks
Structural Variants Pipeline for Long Reads
☆44Updated 7 years ago
Alternatives and similar repositories for Picky
Users that are interested in Picky are comparing it to the libraries listed below
Sorting:
- ☆81Updated 7 months ago
- Code for phasing SVs with SNPs☆52Updated 5 years ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- ☆78Updated 5 years ago
- Public Benchmark of Long-Read Structural Variant Caller on PacBio CCS HG002 Data☆51Updated 4 years ago
- Variant annotation and merging pipeline☆39Updated 2 months ago
- Structural variant caller☆55Updated 3 years ago
- ☆48Updated last year
- ☆30Updated 4 years ago
- A simple tool to calculate reads number and total base count in FASTQ file☆21Updated 6 years ago
- Long read alignment analysis. Generate a reports on sequence alignments for mappability vs read sizes, error patterns, annotations and r…☆49Updated 7 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Set of tools to manipulate and visualize modified base bam files☆56Updated 3 years ago
- A pipeline for isoseq☆23Updated 7 years ago
- ☆51Updated 6 years ago
- Structural variant merging tool☆55Updated last year
- SV genotyping with long reads☆39Updated 2 years ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆36Updated 2 months ago
- MethPhaser: methylation-based haplotype phasing of human genomes☆49Updated 7 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆103Updated 4 years ago
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- ☆37Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 9 months ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Updated 4 years ago
- Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing☆38Updated last year
- Segmental Duplication Assembler (SDA).☆44Updated 2 years ago
- Genotype and phase short tandem repeats using Illumina whole-genome sequencing data☆32Updated 4 years ago
- Structural variant caller for real-time long-read sequencing data☆57Updated 2 years ago
- heuristics to merge structural variant calls in VCF format.☆38Updated 9 years ago
- Extract modifed base call information from Guppy Fast5 files.☆14Updated 3 years ago