jgurtowski / nanocorr
Error correction for Oxford Nanopore data
☆47Updated 3 years ago
Alternatives and similar repositories for nanocorr:
Users that are interested in nanocorr are comparing it to the libraries listed below
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆42Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆54Updated last year
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 5 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated 11 months ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 4 years ago
- ☆17Updated 6 years ago
- Merge transcriptome assemblies☆30Updated 8 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆92Updated 8 years ago
- Generates an NCBI .tbl file of annotations on a genome.☆65Updated 6 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆47Updated 5 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 5 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- ☆43Updated 8 years ago
- finshingTool☆55Updated 8 years ago
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing effici…☆14Updated 6 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- Synteny Imager☆60Updated 5 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 2 years ago
- Rank-based Gene Ontology analysis of gene expression data☆40Updated 2 years ago