jgurtowski / nanocorr
Error correction for Oxford Nanopore data
☆47Updated 3 years ago
Alternatives and similar repositories for nanocorr:
Users that are interested in nanocorr are comparing it to the libraries listed below
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 2 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- ☆17Updated 7 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- tools for assessing the accuracy of genome assemblies☆34Updated last year
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆58Updated 4 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆46Updated 3 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- reference-based long read assemblies of bacterial genomes☆48Updated 3 years ago
- Genome Annotation Without Nightmares☆43Updated 3 months ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing effici…☆14Updated 6 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 5 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆46Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆74Updated 4 years ago
- de.NBI Nanopore Training Course☆20Updated 2 years ago