TULIP - The Uncorrected Long read Itegration Pipeline
☆27Jan 15, 2018Updated 8 years ago
Alternatives and similar repositories for TULIP
Users that are interested in TULIP are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Nanopore desc☆18Aug 22, 2016Updated 9 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Scaffolding with assembly likelihood optimization☆21Dec 14, 2020Updated 5 years ago
- Graph based multi genome aligner☆49Sep 17, 2021Updated 4 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Oct 14, 2016Updated 9 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 8 years ago
- ☆26Oct 31, 2019Updated 6 years ago
- Filter of Pairwise Alignement☆45Jan 31, 2022Updated 4 years ago
- Module to determine where repeats are and make soft-masks of said☆10Mar 14, 2024Updated 2 years ago
- ☆17Apr 1, 2018Updated 8 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- BESST - scaffolder for genomic assemblies☆58Jul 6, 2023Updated 3 years ago
- The MARVEL assembler☆80Jul 7, 2023Updated 3 years ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 6 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆18Nov 16, 2015Updated 10 years ago
- Manipulate FASTA files☆29Aug 26, 2014Updated 11 years ago
- An algorithm for centromere assembly using long error-prone reads☆25May 25, 2021Updated 5 years ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Nov 20, 2016Updated 9 years ago
- Falcon2Fastg is a tool for converting a FALCON assembly to FASTG format to visualize with Bandage☆13May 16, 2016Updated 10 years ago
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 9 years ago
- Correction of palindromes in long reads from PacBio and Nanopore☆14Mar 1, 2022Updated 4 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago
- PacBio hybrid error correction through iterative short read consensus☆60May 17, 2019Updated 7 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆20Oct 13, 2014Updated 11 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Feb 2, 2021Updated 5 years ago
- Profile HMM-based hybrid error correction algorithm for long reads☆21Aug 15, 2018Updated 7 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Jun 4, 2026Updated 2 months ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆183Jul 30, 2019Updated 7 years ago
- Software accompanying "HINGE: Long-Read Assembly Achieves Optimal Repeat Resolution"☆65Oct 15, 2020Updated 5 years ago
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆23May 29, 2018Updated 8 years ago
- Archived version 1.0.2☆16Nov 25, 2019Updated 6 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆19Nov 21, 2024Updated last year
- Genomic Assemblies Merger for NGS☆26Nov 10, 2023Updated 2 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Jul 2, 2020Updated 6 years ago
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆47Feb 17, 2021Updated 5 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Dec 13, 2023Updated 2 years ago
- Analysis tool for Nanopore sequencing data☆34Apr 15, 2019Updated 7 years ago