scottgigante / picoporeLinks
A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information
☆30Updated 2 years ago
Alternatives and similar repositories for picopore
Users that are interested in picopore are comparing it to the libraries listed below
Sorting:
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆58Updated 3 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 6 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 7 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆53Updated 7 years ago
- 10x Genomics Reads Simulator☆46Updated 2 years ago
- Using kallisto for metagenomic analysis☆49Updated 8 years ago
- Pipeline for structural variant image curation and analysis.☆49Updated 4 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Updated 7 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 7 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 8 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆50Updated 4 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆77Updated 9 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆36Updated 2 years ago
- Tools and software library developed by the ONT Applications group☆64Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 4 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 5 years ago
- UCSC Nanopore☆44Updated 6 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- FermiKit small variant calls for public SGDP samples☆17Updated 9 years ago
- Code for nanopore paper☆33Updated 10 years ago
- Animated GIF of flow cell performance from sequencing summary file.☆13Updated 7 years ago