scottgigante / picopore
A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information
☆31Updated last year
Alternatives and similar repositories for picopore:
Users that are interested in picopore are comparing it to the libraries listed below
- Analysis tool for Nanopore sequencing data☆33Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- Error correction for Oxford Nanopore data☆47Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 7 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 6 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- A tool for fetching nanopore fast5 files after filtering via demultiplexing, alignment, or other, to improve downstream processing effici…☆14Updated 6 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆48Updated 5 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Merge transcriptome assemblies☆30Updated 8 years ago
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- A method of assessing sequence complexity based on kmer frequencies☆31Updated 6 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Visualize whole genome alignments as linear maps☆71Updated 6 months ago
- Dot: An interactive dot plot viewer for comparative genomics☆6Updated 5 years ago