scottgigante / picoporeLinks
A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information
☆31Updated last year
Alternatives and similar repositories for picopore
Users that are interested in picopore are comparing it to the libraries listed below
Sorting:
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆48Updated 4 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Animated GIF of flow cell performance from sequencing summary file.☆13Updated 7 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆7Updated 5 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 7 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 8 months ago
- Exploration of controlled loss of quality values for compressing CRAM files☆35Updated 2 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Updated 6 years ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago