BioInf-Wuerzburg / proovreadLinks
PacBio hybrid error correction through iterative short read consensus
β60Updated 6 years ago
Alternatives and similar repositories for proovread
Users that are interested in proovread are comparing it to the libraries listed below
Sorting:
- πGenome assembly scaffolder using minimizer graphsβ84Updated last year
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignmentβ87Updated 4 years ago
- A tool for Racon polishing of miniasm assembliesβ78Updated last month
- βοΈ Genome assembly polishing & SNV detectionβ70Updated 3 weeks ago
- β Long Interval Nucleotide K-mer Scaffolderβ74Updated 6 months ago
- Generates an NCBI .tbl file of annotations on a genome.β68Updated 7 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2β76Updated 9 years ago
- Error correction for Illumina RNA-seq readsβ67Updated last year
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Royeβ¦β58Updated 4 years ago
- Hybrid error correction of long reads using colored de Bruijn graphsβ106Updated last month
- Read, manipulate and visualize 'Pairwise mApping Format' data in Rβ74Updated 4 years ago
- Synteny Imagerβ64Updated 3 months ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfishβ57Updated 2 years ago
- Tools for working with second gen assemblies, fasta sequences, etcβ93Updated 9 years ago
- Software for clustering de novo assembled transcripts and counting overlapping readsβ74Updated 3 years ago
- Improve the quality of a denovo assembly by scaffolding and gap fillingβ56Updated 4 years ago
- Building SuperTranscripts: A linear representation of transcriptome dataβ67Updated 4 years ago
- Assembly statistic visualisationβ90Updated last year
- Scripts and programs for the Holt Lab's MinION desktopβ32Updated 4 years ago
- Implementation of the multiple sequential markovian coalescentβ89Updated 2 months ago
- finshingToolβ54Updated 8 years ago
- β44Updated 8 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.β47Updated 2 weeks ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodulesβ88Updated 7 years ago
- Conditional Reciprocal Best Blastβ42Updated 8 years ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Tβ¦β59Updated 2 years ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.β109Updated 3 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.β86Updated 11 months ago
- Dotplot large Genomes in an Interactive, Efficient and Simple wayβ108Updated 3 weeks ago
- Genome Annotation Without Nightmaresβ46Updated 9 months ago