nickloman / poredb
☆19Updated 8 years ago
Alternatives and similar repositories for poredb:
Users that are interested in poredb are comparing it to the libraries listed below
- Bioinformatics pipeline for nanopore sequencing data☆11Updated 6 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 10 months ago
- Utility program for extracting sequences from a fasta/fastq file☆36Updated 4 months ago
- Analysis pipeline for functional metagenomic sequencing data obtained using nanopore sequencing☆12Updated 8 years ago
- blast, shmlast☆22Updated 4 years ago
- Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI☆29Updated 6 years ago
- kASA - k-Mer Analysis of Sequences based on Amino acid-like encoding☆23Updated last year
- Genomic Assemblies Merger for NGS☆26Updated last year
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Find Unique genomic Regions☆29Updated last month
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 5 months ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 5 years ago
- De novo VIral Genome Annotator☆21Updated 7 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Indel-aware consensus for aligned BAM☆21Updated last month
- Accurate and fast taxonomic classification using pseudoaligning☆21Updated 7 years ago
- Analyze a set of genomes with the anvi'o pangenome pipeline☆17Updated last year
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Updated 4 years ago
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- (Obsolete) NCBI Prokaryotic Genome Annotation Pipeline. New site:☆16Updated 6 years ago
- Benchmark MinION assembler pipelines and publish your results in a heartbeat!☆15Updated 5 years ago
- Rapid competitive read demulitplexer. Made with tries.☆23Updated last year
- Scripts for creating a Kraken database from the Comprehensive Antibiotic Resistance Database☆10Updated 8 years ago
- transposable element typing pipeline☆17Updated last year
- ☆16Updated 7 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- Advanced metagenomic Sequence Analysis in R☆15Updated 6 years ago