marcus1487 / nanorawLinks
Genome guided re-segmention and visualization for raw nanopore sequencing data.
☆46Updated 6 years ago
Alternatives and similar repositories for nanoraw
Users that are interested in nanoraw are comparing it to the libraries listed below
Sorting:
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆83Updated 8 months ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- ☆49Updated 7 months ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Code for nanopore paper☆33Updated 10 years ago
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- UCSC Nanopore☆43Updated 5 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- A Circos-based tool to visualize genome assembly consistency or synteny between assemblies.☆80Updated 7 months ago
- ☆35Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 7 months ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- MARS: improving Multiple circular sequence Alignment using Refined Sequences☆29Updated last month
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆85Updated 7 years ago
- Same species annotation lift over pipeline.☆97Updated last year
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- Edinburgh Genomics MinION training 2016☆33Updated 8 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆57Updated 2 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- A tool for Racon polishing of miniasm assemblies☆76Updated 3 weeks ago
- ☆31Updated last year