marcus1487 / nanoraw
Genome guided re-segmention and visualization for raw nanopore sequencing data.
β46Updated 6 years ago
Alternatives and similar repositories for nanoraw:
Users that are interested in nanoraw are comparing it to the libraries listed below
- β48Updated 6 months ago
- πGenome assembly scaffolder using minimizer graphsβ83Updated 7 months ago
- PacBio hybrid error correction through iterative short read consensusβ61Updated 5 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2β74Updated 8 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rateβ30Updated 3 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txtβ30Updated 4 years ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, etβ¦β89Updated 5 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processingβ90Updated 3 years ago
- Error correction for Illumina RNA-seq readsβ66Updated last year
- Scripts and programs for the Holt Lab's MinION desktopβ32Updated 4 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.β54Updated 6 months ago
- β31Updated last year
- Wally: Visualization of aligned sequencing reads and contigsβ115Updated 3 weeks ago
- Toolkit for calling structural variants using short or long readsβ102Updated this week
- Visualize whole genome alignments as linear mapsβ72Updated 7 months ago
- Experimental pipeline for correcting nanopore readsβ39Updated 7 years ago
- Automatically optimise three of Velvet's assembly parameters.β47Updated 2 years ago
- UCSC Nanoporeβ43Updated 5 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.β47Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of referenceβ¦β66Updated 2 years ago
- Remove lambda phage reads from a fastq fileβ29Updated 2 years ago
- A fork of exonerate: a generic tool for sequence alignmentβ65Updated last year
- Tools for working with second gen assemblies, fasta sequences, etcβ93Updated 8 years ago
- Building SuperTranscripts: A linear representation of transcriptome dataβ67Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.β37Updated 5 years ago
- SV caller for nanopore dataβ91Updated 4 years ago
- ONT assembly and Illumina polishing pipelineβ91Updated 4 years ago
- A tool for Racon polishing of miniasm assembliesβ74Updated 4 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 filesβ53Updated 2 years ago
- Tools to annotate genomes using long read transcriptomics dataβ45Updated 4 years ago