marcus1487 / nanorawLinks
Genome guided re-segmention and visualization for raw nanopore sequencing data.
☆47Updated 6 years ago
Alternatives and similar repositories for nanoraw
Users that are interested in nanoraw are comparing it to the libraries listed below
Sorting:
- Experimental pipeline for correcting nanopore reads☆39Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- ☆31Updated last year
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 3 years ago
- UCSC Nanopore☆43Updated 6 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 3 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆45Updated last month
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- Analysis tool for Nanopore sequencing data☆34Updated 6 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 9 months ago
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆92Updated 3 months ago
- Scripts for implementing read until and other examples.☆32Updated 5 years ago
- ☆49Updated 9 months ago
- A versatile toolkit for k-mers with taxonomic information☆80Updated this week
- HMM-HDP models for MinION signal alignments☆46Updated 8 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Python client library for Guppy☆32Updated 3 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated 2 years ago
- Visualize whole genome alignments as linear maps☆73Updated 3 weeks ago
- adds sample names and read-group (RG) tags to BAM alignments☆51Updated 4 years ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆62Updated 5 years ago