mateidavid / nanocall
An Oxford Nanopore Basecaller
☆71Updated 3 years ago
Related projects ⓘ
Alternatives and complementary repositories for nanocall
- Experimental pipeline for correcting nanopore reads☆39Updated 7 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 5 years ago
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Updated 2 years ago
- High-performance error correction for Illumina resequencing data☆69Updated 8 years ago
- SV caller for nanopore data☆91Updated 4 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 5 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆67Updated 2 years ago
- Error correction for Oxford Nanopore data☆47Updated 3 years ago
- Genome inference from a population reference graph☆93Updated 2 years ago
- 10x Genomics Reads Simulator☆45Updated 10 months ago
- ☆49Updated last year
- A tool for Racon polishing of miniasm assemblies☆73Updated 3 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆46Updated 3 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 5 years ago
- Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules☆83Updated 6 years ago
- LoFreq Star: Sensitive variant calling from sequencing data☆100Updated 2 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆6Updated 4 years ago
- Scripts for implementing read until and other examples.☆31Updated 4 years ago
- Find all significant local alignments between reads☆139Updated 4 months ago
- Adaptive semi-global banded alignment on string graphs☆63Updated 6 years ago
- UCSC Nanopore☆43Updated 5 years ago
- ONT assembly and Illumina polishing pipeline☆91Updated 3 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated 11 months ago
- De novo genome assembly and multisample variant calling☆113Updated 5 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated last year
- k-mer counting software☆38Updated 2 years ago
- profile basd Illumina pair-end Reads Simulator☆26Updated 11 months ago
- This repo is DEPRECATED. Please use minimap2, the successor of minimap.☆106Updated 7 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆68Updated 2 years ago
- ☆46Updated 2 weeks ago