opencb / hpg-poreLinks
Nanopore desc
☆18Updated 9 years ago
Alternatives and similar repositories for hpg-pore
Users that are interested in hpg-pore are comparing it to the libraries listed below
Sorting:
- reference free variant assembly☆34Updated 2 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- ☆18Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- Utility program for extracting sequences from a fasta/fastq file☆35Updated 9 months ago
- Scripts for implementing read until and other examples.☆32Updated 5 years ago
- Read nanopore sequence reads in real-time☆14Updated 8 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Fast but inaccurate adapter trimmer for Illumina reads☆16Updated 3 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Ebola virus surveillance☆15Updated 9 years ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated this week
- Mapping-free variant caller for short-read Illumina data☆19Updated 5 years ago
- Developments in next generation sequencing: instruments, read lengths, throughput. See☆27Updated 7 years ago
- Guide to transcriptome assembly & analysis☆21Updated 8 years ago
- INC-Seq: Accurate single molecule reads using nanopore sequencing☆15Updated 5 years ago
- ☆11Updated 2 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Code for nanopore paper☆33Updated 10 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Updated 6 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- FAST: Fast Analysis of Sequences Toolbox☆31Updated 5 years ago