arq5x / poretools
a toolkit for working with Oxford nanopore data
☆243Updated last year
Alternatives and similar repositories for poretools:
Users that are interested in poretools are comparing it to the libraries listed below
- Pilon is an automated genome assembly improvement and variant detection tool☆345Updated 2 years ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆273Updated 3 months ago
- An overview of all nanopack tools☆226Updated last year
- Count bases in BAM/CRAM files☆309Updated 2 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆180Updated 5 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆276Updated 8 months ago
- VarDict☆191Updated last year
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆193Updated 2 weeks ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆295Updated 10 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆215Updated 3 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆313Updated 7 months ago
- quality filtering tool for long reads☆308Updated last year
- Repository for the GA4GH Benchmarking Team work developing standardized benchmarking methods for germline small variant calls☆195Updated 3 years ago
- A tool to circularize genome assemblies☆233Updated 9 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆256Updated 6 months ago
- RTG Tools: Utilities for accurate VCF comparison and manipulation