a toolkit for working with Oxford nanopore data
☆242Feb 6, 2023Updated 3 years ago
Alternatives and similar repositories for poretools
Users that are interested in poretools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis tool for Nanopore sequencing data☆34Apr 15, 2019Updated 7 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆30Dec 13, 2023Updated 2 years ago
- Signal-level algorithms for MinION data☆596Aug 5, 2023Updated 2 years ago
- ONT assembly and Illumina polishing pipeline☆87Dec 8, 2020Updated 5 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆182Jul 30, 2019Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 6 years ago
- Experimental pipeline for correcting nanopore reads☆39May 23, 2017Updated 8 years ago
- An Oxford Nanopore Basecaller☆70Sep 4, 2021Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆35Apr 17, 2016Updated 10 years ago
- Read nanopore sequence reads in real-time☆14Feb 9, 2017Updated 9 years ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆55Oct 6, 2015Updated 10 years ago
- ☆17Apr 1, 2018Updated 8 years ago
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆94Jan 13, 2022Updated 4 years ago
- Error correction for Oxford Nanopore data☆47May 29, 2021Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Real time data analysis tools for the minION sequencing platform.☆30Apr 12, 2022Updated 4 years ago
- Quality control for MinION sequencing data☆218Mar 17, 2026Updated last month
- adapter trimmer for Oxford Nanopore reads☆387May 8, 2024Updated last year
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Jun 27, 2022Updated 3 years ago
- A single molecule sequence assembler for genomes large and small.☆700Feb 24, 2026Updated 2 months ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Nov 25, 2017Updated 8 years ago
- Genome guided re-segmention and visualization for raw nanopore sequencing data.☆47Dec 20, 2018Updated 7 years ago
- A basecaller for Oxford Nanopore Technologies' sequencers☆121Jul 6, 2023Updated 2 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Oct 11, 2018Updated 7 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- [MOVED] Moved to paoloshasta/shasta. De novo assembly from Oxford Nanopore reads☆273Oct 13, 2022Updated 3 years ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204May 4, 2023Updated 2 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Jan 18, 2021Updated 5 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆353Jul 19, 2025Updated 9 months ago
- Filtering and trimming of long read sequencing data☆217Jan 16, 2023Updated 3 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆297May 9, 2024Updated last year
- Code for nanopore paper☆33Jun 26, 2015Updated 10 years ago
- [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long read…☆125Sep 10, 2018Updated 7 years ago
- Scripts for implementing read until and other examples.☆31Feb 25, 2020Updated 6 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.☆234May 4, 2023Updated 2 years ago
- ☆18Mar 5, 2017Updated 9 years ago
- Flip-flop basecaller for Oxford Nanopore reads☆99Jan 13, 2022Updated 4 years ago
- Scaffolding with RNA-seq read alignment☆21Jul 10, 2018Updated 7 years ago
- Plotting scripts for long read sequencing data☆547Mar 17, 2026Updated last month
- Nanopore desc☆18Aug 22, 2016Updated 9 years ago
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆2,164Updated this week