arq5x / poretoolsLinks
a toolkit for working with Oxford nanopore data
☆245Updated 2 years ago
Alternatives and similar repositories for poretools
Users that are interested in poretools are comparing it to the libraries listed below
Sorting:
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆181Updated 6 years ago
- Pilon is an automated genome assembly improvement and variant detection tool☆369Updated 3 years ago
- de novo sequence assembler using string graphs☆240Updated 6 years ago
- Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads. http://genome.cshlp.org/content/early/2017/01/18/gr…☆287Updated last year
- A comparison of different Oxford Nanopore basecallers☆315Updated 6 years ago
- Classifier for metagenomic sequences☆266Updated 3 months ago
- Fast and frugal disk based k-mer counter☆302Updated last week
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated 11 months ago
- 🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results☆239Updated last year
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆205Updated last year
- Reads simulator☆281Updated 4 years ago
- A tool set for short variant discovery in genetic sequence data.☆202Updated 4 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆277Updated 8 months ago
- VarDict☆198Updated last year
- Quality control for MinION sequencing data☆215Updated 2 years ago
- ☆131Updated 2 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆144Updated 9 years ago
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆306Updated last year
- A tool to circularize genome assemblies☆247Updated last year
- Count bases in BAM/CRAM files☆318Updated 3 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆241Updated 4 years ago
- Windowed Adaptive Trimming for fastq files using quality☆224Updated 8 years ago
- Ultrafast de novo assembly for long noisy reads (though having no consensus step)☆340Updated 2 months ago
- Oxford Nanopore Technologies fast5 API software☆154Updated last year
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 7 years ago
- An overview of all nanopack tools☆270Updated 2 years ago
- Read trimming tool for Illumina NGS data.☆146Updated 10 years ago
- Finds SNP sites from a multi-FASTA alignment file☆266Updated 4 years ago
- FASTA/FASTQ pre-processing programs☆190Updated 3 years ago
- FALCON: experimental PacBio diploid assembler -- Out-of-date -- Please use a binary release: https://github.com/PacificBiosciences/FALCON…☆205Updated 3 years ago