nanoporetech / tomboLinks
Tombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
☆233Updated 2 years ago
Alternatives and similar repositories for tombo
Users that are interested in tombo are comparing it to the libraries listed below
Sorting:
- Oxford Nanopore Technologies fast5 API software☆154Updated last year
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆271Updated 6 months ago
- Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling☆292Updated last week
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆141Updated 2 weeks ago
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆283Updated 9 months ago
- 3D de novo assembly (3D DNA) pipeline☆214Updated last year
- NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on r…☆304Updated last year
- An overview of all nanopack tools☆265Updated 2 years ago
- ☆205Updated this week
- A bioinformatics tool for working with modified bases☆207Updated last week
- A minimap2 frontend for PacBio native data formats☆202Updated 5 months ago
- Megalodon is a research command line tool to extract high accuracy modified base and sequence variant calls from raw nanopore reads by a…☆204Updated 2 years ago
- Fast and accurately polish the genome generated by long reads.☆229Updated 7 months ago
- Quality control for MinION sequencing data☆217Updated 2 years ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆239Updated 4 years ago
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago
- ☆213Updated 6 months ago
- Read trimming tool for Illumina NGS data.☆140Updated 10 years ago
- Nanopore demultiplexing, QC and alignment pipeline☆207Updated last month
- Tool to plot synteny and structural rearrangements between genomes☆317Updated 4 months ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆172Updated last year
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆234Updated 11 months ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆267Updated last month
- Benchmarking of long-read assembly tools for bacterial whole genomes☆171Updated 4 years ago
- ☆131Updated last week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆218Updated last month
- Generate an interactive dot plot from mummer or minimap alignments☆207Updated last year
- Long read / genome alignment software☆294Updated 9 months ago
- Methylation/modified base calling separated from basecalling.☆179Updated 10 months ago
- Training models for basecalling Oxford Nanopore reads☆115Updated 3 years ago