mdcao / npReaderLinks
Read nanopore sequence reads in real-time
☆14Updated 8 years ago
Alternatives and similar repositories for npReader
Users that are interested in npReader are comparing it to the libraries listed below
Sorting:
- Workflows for correcting and scaffolding long-read (PacBio, nanopore) genome assemblies using optical mapping and/or Dovetail Hi-C data☆20Updated 4 years ago
- Annotated Genome Optimization Using Transcriptome Information☆20Updated 5 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Software for Nanopore Analysis☆10Updated 7 years ago
- genomic alignment similarity search tool☆18Updated 2 months ago
- SAMsift: advanced filtering and tagging of SAM/BAM alignments using Python expressions.☆23Updated 7 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆56Updated last year
- Fast in-silico normalization algorithm for NGS data☆23Updated 3 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆29Updated 10 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- Functions to compare a SV call sets against a truth set.☆30Updated last month
- In-depth characterization and annotation of differences between two sets of DNA sequences☆61Updated 5 years ago
- Find Unique genomic Regions☆30Updated last week
- Fast and accurate tool for estimating genomic distances between genome-skims☆45Updated last year
- Scaffolding with assembly likelihood optimization☆22Updated 4 years ago
- Scaffolding genomes using synthetic long read clouds☆20Updated 8 years ago
- Scaffolding with RNA-seq read alignment☆21Updated 7 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- transposable element typing pipeline☆18Updated last year
- ☆15Updated 7 years ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Improved Phased Assembler☆28Updated 3 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆44Updated 2 weeks ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆23Updated 2 years ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 4 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- ☆26Updated 5 years ago