wyp1125 / MCScanXLinks
MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
☆271Updated last month
Alternatives and similar repositories for MCScanX
Users that are interested in MCScanX are comparing it to the libraries listed below
Sorting:
- Any Way to Show Multi genomic Synteny☆210Updated 4 months ago
- Fast and accurate de novo assembler for long reads☆396Updated last year
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆214Updated 4 months ago
- Fast and accurately polish the genome generated by long reads.☆234Updated 10 months ago
- 3D de novo assembly (3D DNA) pipeline☆218Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆329Updated 7 months ago
- PASA software☆194Updated 9 months ago
- Synteny and Rearrangement Identifier☆421Updated 6 months ago
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆243Updated 4 years ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆283Updated 9 months ago
- quality filtering tool for long reads☆374Updated 2 months ago
- Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis☆320Updated 2 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆282Updated 2 weeks ago
- Extensive de-novo TE Annotator☆413Updated last month
- Generate an interactive dot plot from mummer or minimap alignments☆210Updated last year
- TransDecoder source☆298Updated last month
- Pilon is an automated genome assembly improvement and variant detection tool☆371Updated 3 years ago
- ☆219Updated 9 months ago
- An overview of all nanopack tools☆272Updated 2 years ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆355Updated 9 months ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆193Updated last year
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆367Updated last month
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆240Updated 2 weeks ago
- Finds SNP sites from a multi-FASTA alignment file☆268Updated 4 years ago
- Genome Assembly and Annotation Service code☆216Updated last year
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆430Updated 3 weeks ago
- Eukaryotic Genome Annotation Pipeline-External caller scripts and documentation☆165Updated 4 months ago
- Eukaryotic Genome Annotation Pipeline☆366Updated 4 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆177Updated last year
- Filtering and trimming of long read sequencing data☆208Updated 2 years ago