wyp1125 / MCScanX
MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
☆251Updated 3 months ago
Alternatives and similar repositories for MCScanX:
Users that are interested in MCScanX are comparing it to the libraries listed below
- Any Way to Show Multi genomic Synteny☆177Updated 5 months ago
- Pilon is an automated genome assembly improvement and variant detection tool☆354Updated 2 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆246Updated last week
- Fast and accurate de novo assembler for long reads☆382Updated 10 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆390Updated last month
- 3D de novo assembly (3D DNA) pipeline☆207Updated last year
- Fast and accurately polish the genome generated by long reads.☆219Updated 2 months ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆322Updated this week
- Tool to plot synteny and structural rearrangements between genomes☆300Updated last month
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆221Updated 4 years ago
- Synteny and Rearrangement Identifier☆367Updated 3 weeks ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆207Updated 3 weeks ago
- TransDecoder source☆285Updated 5 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆267Updated last month
- A tool for generating consensus long-read assemblies for bacterial genomes☆316Updated 9 months ago
- ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data☆174Updated 5 months ago
- An overview of all nanopack tools☆236Updated last year
- Generate an interactive dot plot from mummer or minimap alignments☆197Updated last year
- Genome Assembly and Annotation Service code☆209Updated last year
- HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data☆169Updated last month
- Extensive de-novo TE Annotator☆366Updated 2 weeks ago
- ☆199Updated last month
- Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics☆183Updated last month
- Eukaryotic Genome Annotation Pipeline☆338Updated 2 weeks ago
- quality filtering tool for long reads☆323Updated last year
- KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files☆329Updated last year
- Tools for fast and flexible genome assembly scaffolding and improvement☆495Updated last year
- pycoQC computes metrics and generates Interactive QC plots from the sequencing summary report generated by Oxford Nanopore technologies b…☆276Updated 5 months ago
- LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also…☆197Updated 3 weeks ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆136Updated 3 years ago