Alternatives and similar repositories for Augustus

Users that are interested in Augustus are comparing it to the libraries listed below

• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆426Updated 8 months ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆363Updated 3 months ago
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆256Updated 2 years ago
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆413Updated 5 months ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆369Updated 3 years ago
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆321Updated 6 months ago
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆394Updated last year
• Ecogenomics / CheckM
  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes
  ☆386Updated 3 months ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆272Updated 3 weeks ago
• malonge / RagTag
  Tools for fast and flexible genome assembly scaffolding and improvement
  ☆535Updated last year
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆366Updated 3 weeks ago
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆241Updated 4 years ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆298Updated last week
• mummer4 / mummer
  Mummer alignment tool
  ☆526Updated 8 months ago
• wyp1125 / MCScanX
  MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
  ☆270Updated this week
• jenniferlu717 / KrakenTools
  KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
  ☆351Updated 2 months ago
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆247Updated last year
• sortmerna / sortmerna
  SortMeRNA: next-generation sequence filtering and alignment tool
  ☆277Updated last month
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆364Updated last week
• rrwick / Porechop
  adapter trimmer for Oxford Nanopore reads
  ☆373Updated last year
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆333Updated 3 weeks ago
• sanger-pathogens / Roary
  Rapid large-scale prokaryote pan genome analysis
  ☆355Updated 3 years ago
• jenniferlu717 / Bracken
  Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species i…
  ☆321Updated 7 months ago
• DaehwanKimLab / centrifuge
  Classifier for metagenomic sequences
  ☆266Updated 3 months ago
• edgardomortiz / vcf2phylip
  Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
  ☆318Updated 2 years ago
• sanger-pathogens / snp-sites
  Finds SNP sites from a multi-FASTA alignment file
  ☆266Updated 4 years ago
• ParBLiSS / FastANI
  Fast Whole-Genome Similarity (ANI) Estimation
  ☆430Updated 2 months ago
• schatzlab / genomescope
  Fast genome analysis from unassembled short reads
  ☆297Updated last year
• usadellab / Trimmomatic
  ☆268Updated last month
• aquaskyline / SOAPdenovo2
  Next generation sequencing reads de novo assembler.
  ☆237Updated 2 weeks ago