Alternatives and similar repositories for Augustus:

Users that are interested in Augustus are comparing it to the libraries listed below

• Gaius-Augustus / BRAKER
  BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…
  ☆400Updated 3 months ago
• nextgenusfs / funannotate
  Eukaryotic Genome Annotation Pipeline
  ☆346Updated 2 months ago
• broadinstitute / pilon
  Pilon is an automated genome assembly improvement and variant detection tool
  ☆361Updated 3 years ago
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆252Updated this week
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆303Updated last month
• schneebergerlab / syri
  Synteny and Rearrangement Identifier
  ☆380Updated last week
• aidenlab / 3d-dna
  3D de novo assembly (3D DNA) pipeline
  ☆210Updated last year
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆409Updated 4 months ago
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆268Updated 3 months ago
• pangenome / pggb
  the pangenome graph builder
  ☆427Updated this week
• agshumate / Liftoff
  An accurate GFF3/GTF lift over pipeline
  ☆479Updated last year
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆227Updated 4 years ago
• sortmerna / sortmerna
  SortMeRNA: next-generation sequence filtering and alignment tool
  ☆264Updated 4 months ago
• Nextomics / NextDenovo
  Fast and accurate de novo assembler for long reads
  ☆389Updated last year
• ParBLiSS / FastANI
  Fast Whole-Genome Similarity (ANI) Estimation
  ☆400Updated last year
• wyp1125 / MCScanX
  MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!
  ☆254Updated 4 months ago
• mummer4 / mummer
  Mummer alignment tool
  ☆501Updated 3 months ago
• rrwick / Trycycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆320Updated 11 months ago
• TransDecoder / TransDecoder
  TransDecoder source
  ☆288Updated 7 months ago
• marbl / verkko
  Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…
  ☆335Updated this week
• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆201Updated last week
• rrwick / Filtlong
  quality filtering tool for long reads
  ☆329Updated last year
• sanger-pathogens / circlator
  A tool to circularize genome assemblies
  ☆241Updated last year
• tseemann / barrnap
  Bacterial ribosomal RNA predictor
  ☆243Updated last year
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆211Updated last year
• iqtree / iqtree2
  IQ-TREE software version 2: phylogenetics by maximum likelihood
  ☆283Updated last week
• jtlovell / GENESPACE
  ☆206Updated 3 months ago
• Nextomics / NextPolish
  Fast and accurately polish the genome generated by long reads.
  ☆222Updated 4 months ago
• inab / trimal
  A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
  ☆202Updated this week
• aquaskyline / SOAPdenovo2
  Next generation sequencing reads de novo assembler.
  ☆231Updated last year