davidemms / OrthoFinderLinks
Phylogenetic orthology inference for comparative genomics
☆821Updated 5 months ago
Alternatives and similar repositories for OrthoFinder
Users that are interested in OrthoFinder are comparing it to the libraries listed below
Sorting:
- Fast genome-wide functional annotation through orthology assignment☆682Updated 6 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆882Updated this week
- Rapid prokaryotic genome annotation☆944Updated last week
- Gene cluster comparison figure generator☆626Updated this week
- De novo assembler for single molecule sequencing reads using repeat graphs☆884Updated 7 months ago
- hybrid assembly pipeline for bacterial genomes☆628Updated last year
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆582Updated 2 weeks ago
- Bioinformatics code libraries and scripts☆552Updated 5 months ago
- A quality control analysis tool for high throughput sequencing data☆561Updated last week
- The second version of the Kraken taxonomic sequence classification system☆856Updated 2 weeks ago
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆536Updated 3 months ago
- Prodigal Gene Prediction Software☆522Updated last year
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆711Updated 9 months ago
- A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies like GTDB/ICTV☆452Updated 7 months ago
- SPAdes Genome Assembler☆886Updated last week
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆442Updated 2 months ago
- Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/☆550Updated last week
- A complete pipeline for metagenomic analysis☆440Updated last week
- GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.☆559Updated 2 weeks ago
- Trinity RNA-Seq de novo transcriptome assembly☆879Updated 10 months ago
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆452Updated 2 years ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆447Updated last year
- ☆282Updated 2 months ago
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆384Updated 2 weeks ago
- Mummer alignment tool☆542Updated 10 months ago
- Genome assembly evaluation tool☆488Updated last year
- Eukaryotic Genome Annotation Pipeline☆371Updated 5 months ago
- Rapid haploid variant calling and core genome alignment☆556Updated 2 weeks ago
- python module to plot beautiful and highly customizable genome browser tracks☆857Updated last year
- A flexible pipeline for complete analysis of bacterial genomes☆492Updated last week