davidemms / OrthoFinderLinks
Phylogenetic orthology inference for comparative genomics
☆778Updated 8 months ago
Alternatives and similar repositories for OrthoFinder
Users that are interested in OrthoFinder are comparing it to the libraries listed below
Sorting:
- Fast genome-wide functional annotation through orthology assignment☆625Updated this week
- De novo assembler for single molecule sequencing reads using repeat graphs☆843Updated last month
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆527Updated 3 months ago
- Python library to facilitate genome assembly, annotation, and comparative genomics☆830Updated this week
- Rapid prokaryotic genome annotation☆906Updated last year
- A complete pipeline for metagenomic analysis☆416Updated last week
- hybrid assembly pipeline for bacterial genomes☆601Updated 10 months ago
- Gene cluster comparison figure generator☆582Updated 6 months ago
- The second version of the Kraken taxonomic sequence classification system☆801Updated 2 weeks ago
- ☆253Updated last year
- Tutorials on phylogenetic and phylogenomic inference☆386Updated last year
- MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data☆346Updated this week
- MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis☆426Updated last year
- A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS…☆510Updated 3 months ago
- BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eu…☆411Updated 5 months ago
- Bioinformatics one liners from Ming Tang☆485Updated 4 years ago
- Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes☆374Updated last week
- TransDecoder source☆291Updated 8 months ago
- A quality control analysis tool for high throughput sequencing data☆510Updated last year
- Genome-scale protein function classification☆330Updated this week
- Bioinformatics code libraries and scripts☆528Updated 4 months ago
- GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more☆419Updated 5 months ago
- Rapid haploid variant calling and core genome alignment☆524Updated 11 months ago
- Plotting scripts for long read sequencing data☆482Updated last month
- SPAdes Genome Assembler☆842Updated last month
- NCBI Prokaryotic Genome Annotation Pipeline☆339Updated last week
- Eukaryotic Genome Annotation Pipeline☆355Updated 3 weeks ago
- Hifiasm: a haplotype-resolved assembler for accurate Hifi reads☆643Updated 3 months ago
- Graph-based alignment (Hierarchical Graph FM index)☆502Updated 7 months ago
- python module to plot beautiful and highly customizable genome browser tracks☆819Updated 11 months ago